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Thale cress
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Thale cress
Subcellular Localization
min:
: max

 
Winner_takes_all: peroxisome, plastid, cytosol

Predictor Summary:
  • endoplasmic reticulum 1
  • golgi 1
  • extracellular 1
  • peroxisome 1
  • mitochondrion 1
  • plastid 1
  • cytosol 1
Predictors GFP MS/MS Papers
Winner Takes All:cytosol, peroxisome, plastid
Any Predictor:cytosol, endoplasmic reticulum, extracellular, golgi, peroxisome, plastid
BaCelLo:endoplasmic reticulum, extracellular, golgi
MultiLoc:peroxisome
PProwler:mitochondrion
WoLF PSORT:plastid
YLoc:cytosol
PPI
No PPI Data
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
GSMUA_Achr1P27650_001 Banana cytosol 40.51 38.55
CDY18400 Canola cytosol 87.34 26.14
GSMUA_AchrUn_... Banana cytosol 81.01 25.0
AT2G38230.1 Thale cress cytosol 97.47 24.92
GSMUA_Achr1P25530_001 Banana cytosol 79.75 24.61
CDX93320 Canola cytosol 89.87 24.57
GSMUA_Achr8P31880_001 Banana cytosol 81.01 23.1
AT5G01410.1 Thale cress cytosol 88.61 22.65
Solyc06g081980.1.1 Tomato extracellular, nucleus, plastid, unclear 87.34 22.33
PGSC0003DMT400078045 Potato cytosol 87.34 22.33
KRH21198 Soybean endoplasmic reticulum 86.08 21.86
GSMUA_AchrUn_... Banana cytosol 81.01 21.69
KRH11075 Soybean endoplasmic reticulum, nucleus 84.81 21.54
VIT_06s0004g06640.t01 Wine grape cytosol 88.61 20.77
TraesCS2B01G287600.1 Wheat cytosol 82.28 20.57
HORVU2Hr1G065120.1 Barley cytosol 81.01 20.25
TraesCS2D01G267800.1 Wheat cytosol 81.01 20.25
TraesCS4D01G133600.1 Wheat cytosol 77.22 19.43
TraesCS4A01G178700.1 Wheat cytosol 77.22 19.43
TraesCS4B01G138900.1 Wheat cytosol 77.22 19.43
HORVU4Hr1G027040.2 Barley cytosol, peroxisome 77.22 19.3
Zm00001d007936_P001 Maize cytosol 77.22 19.24
Os07t0100200-01 Rice plasma membrane 77.22 19.18
OQU88300 Sorghum cytosol 75.95 18.93
Os10t0100700-01 Rice plasma membrane 74.68 18.85
Zm00001d018633_P001 Maize cytosol 74.68 18.61
TraesCS2A01G268800.1 Wheat plastid 81.01 16.58
Os11t0708500-01 Rice plasma membrane 73.42 15.98
Zm00001d018632_P001 Maize extracellular 75.95 14.53
AT3G16050.1 Thale cress cytosol 44.3 11.15
Os10t0191600-00 Rice plasma membrane 1.27 0.54
Protein Annotations
KEGG:00750+4.3.3.6Gene3D:3.20.20.70MapMan:35.1EntrezGene:818400ProteinID:AAC27170.1ProteinID:AEC09509.1
ArrayExpress:AT2G38210EnsemblPlantsGene:AT2G38210RefSeq:AT2G38210TAIR:AT2G38210RefSeq:AT2G38210-TAIR-GEnsemblPlants:AT2G38210.1
TAIR:AT2G38210.1InterPro:Aldolase_TIMGO:GO:0003674GO:GO:0003824GO:GO:0005575GO:GO:0005622
GO:GO:0005623GO:GO:0005737GO:GO:0005773GO:GO:0005774GO:GO:0008150GO:GO:0008152
GO:GO:0009058GO:GO:0009987GO:GO:0016020GO:GO:0042819GO:GO:0042823InterPro:IPR001852
InterPro:IPR013785RefSeq:NP_181356.1UniProt:O80446Symbol:PDX1L4PFAM:PF01680PO:PO:0000005
PO:PO:0000293PO:PO:0001017PO:PO:0020003PO:PO:0025281PFscan:PS51129PANTHER:PTHR31829
PANTHER:PTHR31829:SF0InterPro:PdxS/SNZInterPro:PdxS/SNZ_NSUPFAM:SSF110399UniParc:UPI000009DB3C:
Description
PDX1L4Pyridoxal 5'-phosphate synthase PDX1-like 4 [Source:UniProtKB/Swiss-Prot;Acc:O80446]
Coordinates
chr2:+:16006749..16007722
Molecular Weight (calculated)
8142.0 Da
IEP (calculated)
6.515
GRAVY (calculated)
0.310
Length
79 amino acids
Sequence
(BLAST)
1: MAGTGVVAVY GEGAMTETKQ KSPFSVKVGL AQMLRGGVIM DVVNAEQARI AEEAGACAVM ALERVPADIR AQGGVARFC
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.