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Tomato
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Tomato
Subcellular Localization
min:
: max

 
Winner_takes_all: unclear, plastid, extracellular, nucleus

Predictor Summary:
  • nucleus 1
  • vacuole 1
  • plastid 1
  • peroxisome 1
  • cytosol 3
  • mitochondrion 1
Predictors GFP MS/MS Papers
Winner Takes All:extracellular, nucleus, plastid, unclear
Any Predictor:cytosol, mitochondrion, nucleus, peroxisome, plastid, vacuole
BaCelLo:nucleus
EpiLoc:vacuole
iPSORT:plastid
MultiLoc:peroxisome
Plant-mPloc:cytosol
PProwler:mitochondrion
WoLF PSORT:cytosol
YLoc:cytosol
 plastid: 20363867
unclear: 26455813
nucleus: 28394025
extracellular: 29876421
msms PMID: 28394025 doi
AJM Howden, R Stam, V Martinez Heredia, GB Motion, S Ten Have, K Hodge, TM Marques Monteiro Amaro, E Huitema
Cell and Molecular Sciences, JHI, Invergowrie, Dundee, DD2 5DA, UK., Division of Plant Science, School of Life Sciences, University of Dundee at the James Hutton Institute (JHI), Invergowrie, Dundee, DD2 5DA, UK., Dundee Effector Consortium, JHI, Invergowrie, Dundee, DD2 5DA, UK., Section of Population Genetics, Technische Universität München, 85354, Freising, Germany., Wellcome Trust Centre for Gene Regulation and Expression, School of Life Sciences, University of Dundee, Dow Street, Dundee, DD1 5EH, UK.
msms PMID: 20363867 doi
C Barsan, P Sanchez-Bel, C Rombaldi, I Egea, M Rossignol, M Kuntz, M Zouine, A Latché, M Bouzayen, JC Pech
Université de Toulouse, INP-ENSA Toulouse, Génomique et Biotechnologie des Fruits, Avenue de l'Agrobiopole BP 32607, F-31326 Castanet-Tolosan, France.
msms PMID: 29876421 doi
L Ceballos-Laita, E Gutierrez-Carbonell, D Takahashi, A Abadía, M Uemura, J Abadía, AF López-Millán
Cryobiofrontier Research Center, Faculty of Agriculture, Iwate University, Morioka 020-8550, Japan., Plant Stress Physiology Group, Plant Nutrition Department, Aula Dei Experimental Station, CSIC, P.O. Box 13034, 50080 Zaragoza, Spain., United Graduate School of Agricultural Sciences, Iwate University, Morioka 020-8550, Japan., USDA-ARS Children's Nutrition Research Center, Department of Pediatrics, Baylor College of Medicine, 1100 Bates St., Houston, TX 77030, USA.
msms PMID: 26455813 doi
P Paul, P Chaturvedi, M Selymesi, A Ghatak, A Mesihovic, KD Scharf, W Weckwerth, S Simm, E Schleiff
Goethe University, Department of Biosciences, Molecular Cell Biology of Plants, Frankfurt/Main, Germany., Goethe University, Department of Biosciences, Molecular Cell Biology of Plants, Frankfurt/Main, Germany; SPOT-ITN Consortium., Goethe University, Department of Biosciences, Molecular Cell Biology of Plants, Frankfurt/Main, Germany; SPOT-ITN Consortium; Goethe University, Cluster of Excellence Frankfurt, Frankfurt/Main, Germany; Goethe University, Buchmann Institute of Molecular Life Sciences, Frankfurt/Main, Germany. Electronic address: schleiff@bio.uni-frankfurt.de., SPOT-ITN Consortium; University of Vienna, Department of Ecogenomics and Systems biology, Vienna, Austria., University of Vienna, Department of Ecogenomics and Systems biology, Vienna, Austria; School of Biotechnology and Bioinformatics, D.Y. Patil University, Mumbai, India.
PPI

Inferred distinct locusB in Crop

locusBlocations
Solyc03g120090.1.1
Solyc06g081980.1.1
Solyc11g069290.1.1

Inferred from Arabidopsis experimental PPI

Ath locusAlocusBAth locusBPaper
AT2G38230.1 Solyc03g120090.1.1 AT3G16050.1 16766694
AT2G38230.1 Solyc06g081980.1.1 AT5G01410.1 16766694
AT2G38230.1 Solyc11g069290.1.1 AT5G60540.1 16766694
AT5G01410.1 Solyc06g081980.1.1 AT2G38230.1 16766694
AT5G01410.1 Solyc03g120090.1.1 AT3G16050.1 16766694
AT5G01410.1 Solyc03g120090.1.1 AT3G16050.1 21798944
AT5G01410.1 Solyc06g081980.1.1 AT5G01410.1 16766694
AT5G01410.1 Solyc06g081980.1.1 AT5G01410.1 21798944
AT5G01410.1 Solyc11g069290.1.1 AT5G60540.1 16766694
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
PGSC0003DMT400078045 Potato cytosol 99.68 99.68
KRH21198 Soybean endoplasmic reticulum 94.17 93.57
KRH11075 Soybean endoplasmic reticulum, nucleus 93.85 93.25
AT5G01410.1 Thale cress cytosol 92.56 92.56
Bra005687.1-P Field mustard cytosol 92.23 92.23
CDY11202 Canola cytosol 92.23 92.23
CDX80774 Canola cytosol 91.91 91.91
Bra028901.1-P Field mustard cytosol 91.59 91.59
CDY04839 Canola cytosol 91.59 91.59
GSMUA_Achr1P25530_001 Banana cytosol 73.46 88.67
GSMUA_Achr8P31880_001 Banana cytosol 79.29 88.45
CDX93320 Canola cytosol 81.88 87.54
GSMUA_AchrUn_... Banana cytosol 72.49 87.5
AT2G38210.1 Thale cress cytosol, peroxisome, plastid 22.33 87.34
AT2G38230.1 Thale cress cytosol 87.06 87.06
TraesCS2D01G267800.1 Wheat cytosol 88.35 86.39
TraesCS2B01G287600.1 Wheat cytosol 88.35 86.39
HORVU2Hr1G065120.1 Barley cytosol 88.03 86.08
VIT_06s0004g06640.t01 Wine grape cytosol 92.88 85.16
Os07t0100200-01 Rice plasma membrane 86.73 84.28
OQU88300 Sorghum cytosol 86.08 83.91
TraesCS4D01G133600.1 Wheat cytosol 84.47 83.12
HORVU4Hr1G027040.2 Barley cytosol, peroxisome 84.79 82.91
TraesCS4B01G138900.1 Wheat cytosol 84.14 82.8
TraesCS4A01G178700.1 Wheat cytosol 84.14 82.8
Os10t0100700-01 Rice plasma membrane 83.82 82.75
Zm00001d018633_P001 Maize cytosol 84.79 82.65
Zm00001d007936_P001 Maize cytosol 84.79 82.65
CDY18400 Canola cytosol 70.23 82.2
GSMUA_AchrUn_... Banana cytosol 71.52 74.92
TraesCS2A01G268800.1 Wheat plastid 88.35 70.73
Os11t0708500-01 Rice plasma membrane 79.61 67.77
Solyc03g120090.1.1 Tomato cytosol 65.05 65.9
Zm00001d018632_P001 Maize extracellular 85.44 63.92
GSMUA_Achr1P27650_001 Banana cytosol 13.92 51.81
Os10t0191600-00 Rice plasma membrane 29.45 49.19
Protein Annotations
KEGG:00750+4.3.3.6Gene3D:3.20.20.70MapMan:7.7.1.1InterPro:Aldolase_TIMGO:GO:0003674GO:GO:0003824
GO:GO:0008150GO:GO:0008152GO:GO:0009058GO:GO:0009987GO:GO:0042819GO:GO:0042823
InterPro:IPR001852InterPro:IPR013785UniProt:K4CA57HAMAP:MF_01824PFAM:PF01680PIRSF:PIRSF029271
ScanProsite:PS01235PFscan:PS51129PANTHER:PTHR31829InterPro:PdxS/SNZInterPro:PdxS/SNZ_NInterPro:RibuloseP-bd_barrel
SUPFAM:SSF51366EnsemblPlantsGene:Solyc06g081980.1EnsemblPlants:Solyc06g081980.1.1TIGRFAMs:TIGR00343UniParc:UPI0002765590SEG:seg
Description
No Description!
Coordinates
chr6:+:47949265..47950194
Molecular Weight (calculated)
33162.3 Da
IEP (calculated)
6.259
GRAVY (calculated)
0.033
Length
309 amino acids
Sequence
(BLAST)
001: MAGSGVVTVY GNGALTETTK QSPFSVKVGL AQMLRGGVIM DVVNAEQARI AEEAGACAVM ALERVPADIR AQGGVARMSD PQLIKEIKQA VTIPVMAKAR
101: IGHFVEAQIL EAIGIDYVDE SEVLTLADDE NHINKHNFRI PFVCGCRNLG EALRRIREGA AMIRTKGEAG TGNIIEAVRH VRSVMGDIRV LRNMDDDEVF
201: TFAKKIQAPY DLVMQTKQLG RLPVVHFAAG GVATPADAAL MMQLGCDGVF VGSGIFKSGD PAKRGRAIVQ AVTHYSDPQL LAEISCGLGE AMVGINLDEK
301: VERYANRSE
Best Arabidopsis Sequence Match ( AT5G01410.2 )
(BLAST)
001: MEGTGVVAVY GNGAITEAKK SPFSVKVGLA QMLRGGVIMD VVNAEQARIA EEAGACAVMA LERVPADIRA QGGVARMSDP QMIKEIKQAV TIPVMAKARI
101: GHFVEAQILE AIGIDYIDES EVLTLADEDH HINKHNFRIP FVCGCRNLGE ALRRIREGAA MIRTKGEAGT GNIIEAVRHV RSVNGDIRVL RNMDDDEVFT
201: FAKKLAAPYD LVMQTKQLGR LPVVQFAAGG VATPADAALM MQLGCDGVFV GSGIFKSGDP ARRARAIVQA VTHYSDPEML VEVSCGLGEA MVGINLNDEK
301: VERFANRSE
Arabidopsis Description
PDX13RSR4 [Source:UniProtKB/TrEMBL;Acc:A0A178UIV6]
SUBAcon: [cytosol]
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.