Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- plastid 1
- peroxisome 1
- mitochondrion 1
- cytosol 2
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| HORVU2Hr1G065120.1 | Barley | cytosol | 98.73 | 98.73 |
| TraesCS2D01G267800.1 | Wheat | cytosol | 97.15 | 97.15 |
| KRH21198 | Soybean | endoplasmic reticulum | 88.61 | 90.03 |
| Zm00001d018633_P001 | Maize | cytosol | 89.87 | 89.59 |
| KRH11075 | Soybean | endoplasmic reticulum, nucleus | 87.66 | 89.07 |
| PGSC0003DMT400078045 | Potato | cytosol | 86.71 | 88.67 |
| OQU88300 | Sorghum | cytosol | 88.92 | 88.64 |
| Solyc06g081980.1.1 | Tomato | extracellular, nucleus, plastid, unclear | 86.39 | 88.35 |
| Zm00001d007936_P001 | Maize | cytosol | 88.61 | 88.33 |
| GSMUA_Achr1P25530_001 | Banana | cytosol | 71.52 | 88.28 |
| GSMUA_Achr8P31880_001 | Banana | cytosol | 77.22 | 88.09 |
| AT5G01410.1 | Thale cress | cytosol | 85.76 | 87.7 |
| GSMUA_AchrUn_... | Banana | cytosol | 70.89 | 87.5 |
| CDY11202 | Canola | cytosol | 85.13 | 87.06 |
| CDY04839 | Canola | cytosol | 85.13 | 87.06 |
| Bra028901.1-P | Field mustard | cytosol | 85.13 | 87.06 |
| Bra005687.1-P | Field mustard | cytosol | 85.13 | 87.06 |
| CDX80774 | Canola | cytosol | 84.81 | 86.73 |
| TraesCS4B01G138900.1 | Wheat | cytosol | 86.08 | 86.62 |
| CDX93320 | Canola | cytosol | 79.11 | 86.51 |
| AT2G38230.1 | Thale cress | cytosol | 84.49 | 86.41 |
| AT2G38210.1 | Thale cress | cytosol, peroxisome, plastid | 20.57 | 82.28 |
| CDY18400 | Canola | cytosol | 68.67 | 82.2 |
| VIT_06s0004g06640.t01 | Wine grape | cytosol | 85.76 | 80.42 |
| TraesCS2A01G268800.1 | Wheat | plastid | 97.15 | 79.53 |
| GSMUA_AchrUn_... | Banana | cytosol | 69.3 | 74.24 |
| Zm00001d018632_P001 | Maize | extracellular | 89.56 | 68.52 |
| Os10t0191600-00 | Rice | plasma membrane | 29.75 | 50.81 |
| GSMUA_Achr1P27650_001 | Banana | cytosol | 12.97 | 49.4 |
Protein Annotations
| KEGG:00750+4.3.3.6 | Gene3D:3.20.20.70 | MapMan:7.7.1.1 | InterPro:Aldolase_TIM | GO:GO:0003674 | GO:GO:0003824 |
| GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009058 | GO:GO:0009987 | GO:GO:0042819 | GO:GO:0042823 |
| InterPro:IPR001852 | InterPro:IPR013785 | HAMAP:MF_01824 | PFAM:PF01680 | PIRSF:PIRSF029271 | ScanProsite:PS01235 |
| PFscan:PS51129 | PANTHER:PTHR31829 | InterPro:PdxS/SNZ | InterPro:PdxS/SNZ_N | InterPro:RibuloseP-bd_barrel | SUPFAM:SSF51366 |
| TIGRFAMs:TIGR00343 | EnsemblPlantsGene:TraesCS2B01G287600 | EnsemblPlants:TraesCS2B01G287600.1 | TIGR:cd04727 | SEG:seg | : |
Description
No Description!
Coordinates
chr2B:+:396956772..396957866
Molecular Weight (calculated)
33495.4 Da
IEP (calculated)
6.257
GRAVY (calculated)
0.043
Length
316 amino acids
Sequence
(BLAST)
(BLAST)
001: MASDGSGVVT VYGSGNNGTG TQLEPKSSPF SVKVGLAQML RGGVIMDVVN AEQARIAEEA GACAVMALER VPADIRAQGG VARMSDPGLI REIKRAVTIP
101: VMAKARIGHF VEAQILESIG VDYVDESEVL TLADDAHHIN KHNFRVPFVC GCRNLGEALR RIREGAAMIR TKGEAGTGNV IEAVRHVRSV MGDVRALRSM
201: DDDEVFTYAK SIAAPYDLVM QTKQLGRLPV VQFAAGGVAT PADAALMMQL GCDGVFVGSG VFKSGDPARR ARAIVQAVTH YSDPNVLAEV SCDLGEAMVG
301: INLSDPKVER FAARSE
101: VMAKARIGHF VEAQILESIG VDYVDESEVL TLADDAHHIN KHNFRVPFVC GCRNLGEALR RIREGAAMIR TKGEAGTGNV IEAVRHVRSV MGDVRALRSM
201: DDDEVFTYAK SIAAPYDLVM QTKQLGRLPV VQFAAGGVAT PADAALMMQL GCDGVFVGSG VFKSGDPARR ARAIVQAVTH YSDPNVLAEV SCDLGEAMVG
301: INLSDPKVER FAARSE
001: MEGTGVVAVY GNGAITEAKK SPFSVKVGLA QMLRGGVIMD VVNAEQARIA EEAGACAVMA LERVPADIRA QGGVARMSDP QMIKEIKQAV TIPVMAKARI
101: GHFVEAQILE AIGIDYIDES EVLTLADEDH HINKHNFRIP FVCGCRNLGE ALRRIREGAA MIRTKGEAGT GNIIEAVRHV RSVNGDIRVL RNMDDDEVFT
201: FAKKLAAPYD LVMQTKQLGR LPVVQFAAGG VATPADAALM MQLGCDGVFV GSGIFKSGDP ARRARAIVQA VTHYSDPEML VEVSCGLGEA MVGINLNDEK
301: VERFANRSE
101: GHFVEAQILE AIGIDYIDES EVLTLADEDH HINKHNFRIP FVCGCRNLGE ALRRIREGAA MIRTKGEAGT GNIIEAVRHV RSVNGDIRVL RNMDDDEVFT
201: FAKKLAAPYD LVMQTKQLGR LPVVQFAAGG VATPADAALM MQLGCDGVFV GSGIFKSGDP ARRARAIVQA VTHYSDPEML VEVSCGLGEA MVGINLNDEK
301: VERFANRSE
Arabidopsis Description
PDX13RSR4 [Source:UniProtKB/TrEMBL;Acc:A0A178UIV6]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.