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Wheat
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Wheat
Subcellular Localization
min:
: max

 
Winner_takes_all: plastid

Predictor Summary:
  • peroxisome 1
  • mitochondrion 1
  • cytosol 2
Predictors GFP MS/MS Papers
Winner Takes All:plastid
Any Predictor:cytosol, mitochondrion, peroxisome
MultiLoc:peroxisome
PProwler:mitochondrion
WoLF PSORT:cytosol
YLoc:cytosol
 plastid: 22736107
msms PMID: 22736107 doi
AH Kamal, K Cho, DE Kim, N Uozumi, KY Chung, SY Lee, JS Choi, SW Cho, CS Shin, SH Woo
Department of Crop Science, Chungbuk National University, 410 Seongbong-ro, Heungdeok-gu, Cheongju, Chungbuk 361-763, Korea.
PPI

Inferred distinct locusB in Crop

locusBlocations
TraesCS2A01G268800.1
TraesCS2B01G287600.1
TraesCS2D01G267800.1
TraesCS4A01G013200.2
TraesCS4A01G178700.1
TraesCS4B01G138900.1
TraesCS4B01G291200.1
TraesCS4D01G133600.1
TraesCS4D01G289800.1
TraesCS6A01G084600.1
TraesCS6B01G117600.1
TraesCSU01G113600.1

Inferred from Arabidopsis experimental PPI

Ath locusAlocusBAth locusBPaper
AT2G38230.1 TraesCS2A01G268800.1 AT5G01410.1 16766694
AT2G38230.1 TraesCS2B01G287600.1 AT5G01410.1 16766694
AT2G38230.1 TraesCS2D01G267800.1 AT5G01410.1 16766694
AT2G38230.1 TraesCS4A01G178700.1 AT5G01410.1 16766694
AT2G38230.1 TraesCS4B01G138900.1 AT5G01410.1 16766694
AT2G38230.1 TraesCS4D01G133600.1 AT5G01410.1 16766694
AT2G38230.1 TraesCS4A01G013200.2 AT5G60540.1 16766694
AT2G38230.1 TraesCS4B01G291200.1 AT5G60540.1 16766694
AT2G38230.1 TraesCS4D01G289800.1 AT5G60540.1 16766694
AT2G38230.1 TraesCS6A01G084600.1 AT5G60540.1 16766694
AT2G38230.1 TraesCS6B01G117600.1 AT5G60540.1 16766694
AT2G38230.1 TraesCSU01G113600.1 AT5G60540.1 16766694
AT5G01410.1 TraesCS2A01G268800.1 AT2G38230.1 16766694
AT5G01410.1 TraesCS2B01G287600.1 AT2G38230.1 16766694
AT5G01410.1 TraesCS2D01G267800.1 AT2G38230.1 16766694
AT5G01410.1 TraesCS4A01G178700.1 AT2G38230.1 16766694
AT5G01410.1 TraesCS4B01G138900.1 AT2G38230.1 16766694
AT5G01410.1 TraesCS4D01G133600.1 AT2G38230.1 16766694
AT5G01410.1 TraesCS2A01G268800.1 AT5G01410.1 16766694
AT5G01410.1 TraesCS2B01G287600.1 AT5G01410.1 16766694
AT5G01410.1 TraesCS2D01G267800.1 AT5G01410.1 16766694
AT5G01410.1 TraesCS4A01G178700.1 AT5G01410.1 16766694
AT5G01410.1 TraesCS4B01G138900.1 AT5G01410.1 16766694
AT5G01410.1 TraesCS4D01G133600.1 AT5G01410.1 16766694
AT5G01410.1 TraesCS2A01G268800.1 AT5G01410.1 21798944
AT5G01410.1 TraesCS2B01G287600.1 AT5G01410.1 21798944
AT5G01410.1 TraesCS2D01G267800.1 AT5G01410.1 21798944
AT5G01410.1 TraesCS4A01G178700.1 AT5G01410.1 21798944
AT5G01410.1 TraesCS4B01G138900.1 AT5G01410.1 21798944
AT5G01410.1 TraesCS4D01G133600.1 AT5G01410.1 21798944
AT5G01410.1 TraesCS4A01G013200.2 AT5G60540.1 16766694
AT5G01410.1 TraesCS4B01G291200.1 AT5G60540.1 16766694
AT5G01410.1 TraesCS4D01G289800.1 AT5G60540.1 16766694
AT5G01410.1 TraesCS6A01G084600.1 AT5G60540.1 16766694
AT5G01410.1 TraesCS6B01G117600.1 AT5G60540.1 16766694
AT5G01410.1 TraesCSU01G113600.1 AT5G60540.1 16766694
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
TraesCS2D01G267800.1 Wheat cytosol 81.87 100.0
TraesCS2B01G287600.1 Wheat cytosol 79.53 97.15
HORVU2Hr1G065120.1 Barley cytosol 78.5 95.89
Zm00001d018633_P001 Maize cytosol 74.09 90.22
KRH21198 Soybean endoplasmic reticulum 72.54 90.03
KRH11075 Soybean endoplasmic reticulum, nucleus 71.76 89.07
OQU88300 Sorghum cytosol 73.06 88.96
PGSC0003DMT400078045 Potato cytosol 70.98 88.67
GSMUA_Achr1P25530_001 Banana cytosol 58.81 88.67
Zm00001d007936_P001 Maize cytosol 72.8 88.64
Solyc06g081980.1.1 Tomato extracellular, nucleus, plastid, unclear 70.73 88.35
GSMUA_Achr8P31880_001 Banana cytosol 63.21 88.09
GSMUA_AchrUn_... Banana cytosol 58.29 87.89
AT5G01410.1 Thale cress cytosol 70.21 87.7
CDY11202 Canola cytosol 69.69 87.06
CDY04839 Canola cytosol 69.69 87.06
Bra028901.1-P Field mustard cytosol 69.69 87.06
Bra005687.1-P Field mustard cytosol 69.69 87.06
CDX80774 Canola cytosol 69.43 86.73
TraesCS4A01G178700.1 Wheat cytosol 70.47 86.62
CDX93320 Canola cytosol 64.51 86.16
AT2G38230.1 Thale cress cytosol 68.91 86.08
CDY18400 Canola cytosol 55.96 81.82
AT2G38210.1 Thale cress cytosol, peroxisome, plastid 16.58 81.01
VIT_06s0004g06640.t01 Wine grape cytosol 70.21 80.42
GSMUA_AchrUn_... Banana cytosol 56.99 74.58
Zm00001d018632_P001 Maize extracellular 73.58 68.77
Os10t0191600-00 Rice plasma membrane 24.35 50.81
GSMUA_Achr1P27650_001 Banana cytosol 10.88 50.6
Protein Annotations
KEGG:00750+4.3.3.6Gene3D:3.20.20.70MapMan:7.7.1.1InterPro:Aldolase_TIMGO:GO:0003674GO:GO:0003824
GO:GO:0008150GO:GO:0008152GO:GO:0009058GO:GO:0009987GO:GO:0042819GO:GO:0042823
InterPro:IPR001852InterPro:IPR013785HAMAP:MF_01824PFAM:PF01680ScanProsite:PS01235PFscan:PS51129
PANTHER:PTHR31829InterPro:PdxS/SNZInterPro:PdxS/SNZ_NInterPro:RibuloseP-bd_barrelSUPFAM:SSF51366TIGRFAMs:TIGR00343
EnsemblPlantsGene:TraesCS2A01G268800EnsemblPlants:TraesCS2A01G268800.1TIGR:cd04727SEG:seg::
Description
No Description!
Coordinates
chr2A:+:432591407..432592672
Molecular Weight (calculated)
41645.2 Da
IEP (calculated)
7.208
GRAVY (calculated)
-0.095
Length
386 amino acids
Sequence
(BLAST)
001: MRVTRDFRKG EEKECTTMRA GREGEIGFVW SWLVMAARQR VVVLDWPTLE KRRSDLDRPS AHHAPSSIEK MASDGSGVVT VYGSGNNGAG TQLEPKSSPF
101: SVKVGLAQML RGGVIMDVVN AEQARIAEEA GACAVMALER VPADIRAQGG VARMSDPGLI REIKRAVTIP VMAKARIGHF VEAQILESIG VDYVDESEVL
201: TLADDAHHIN KHNFRVPFVC GCRNLGEALR RIREGAAMIR TKGEAGTGNV IEAVRHVRSV MGDVRALRSM DDDEVFTYAK SIAAPYDLVM QTKQLGRLPV
301: VQFAAGGVAT PADAALMMQL GCDGVFVGSG VFKSGDPARR ARAIVQAVTH YSDPNVLAEV SCDLGEAMVG INLSDPKVER FAARSE
Best Arabidopsis Sequence Match ( AT5G01410.2 )
(BLAST)
001: MEGTGVVAVY GNGAITEAKK SPFSVKVGLA QMLRGGVIMD VVNAEQARIA EEAGACAVMA LERVPADIRA QGGVARMSDP QMIKEIKQAV TIPVMAKARI
101: GHFVEAQILE AIGIDYIDES EVLTLADEDH HINKHNFRIP FVCGCRNLGE ALRRIREGAA MIRTKGEAGT GNIIEAVRHV RSVNGDIRVL RNMDDDEVFT
201: FAKKLAAPYD LVMQTKQLGR LPVVQFAAGG VATPADAALM MQLGCDGVFV GSGIFKSGDP ARRARAIVQA VTHYSDPEML VEVSCGLGEA MVGINLNDEK
301: VERFANRSE
Arabidopsis Description
PDX13RSR4 [Source:UniProtKB/TrEMBL;Acc:A0A178UIV6]
SUBAcon: [cytosol]
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.