Factsheet for PGSC0003DMT400078045

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 1
vacuole 1
plastid 1
peroxisome 1
cytosol 3
mitochondrion 1

Predictors

GFP

MS/MS

Papers

cytosol: 22313117

msms PMID: 22313117 doi

S Lim, K Chisholm, RH Coffin, RD Peters, KI Al-Mughrabi, G Wang-Pruski, DM Pinto

Department of Plant and Animal Sciences, Nova Scotia Agricultural College, Truro, Nova Scotia, Canada.

PPI

Inferred distinct locusB in Crop

locusB	locations
PGSC0003DMT400014295
PGSC0003DMT400020828
PGSC0003DMT400078045

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT2G38230.1	PGSC0003DMT400014295	AT3G16050.1	16766694
AT2G38230.1	PGSC0003DMT400078045	AT5G01410.1	16766694
AT2G38230.1	PGSC0003DMT400020828	AT5G60540.1	16766694
AT5G01410.1	PGSC0003DMT400078045	AT2G38230.1	16766694
AT5G01410.1	PGSC0003DMT400014295	AT3G16050.1	16766694
AT5G01410.1	PGSC0003DMT400014295	AT3G16050.1	21798944
AT5G01410.1	PGSC0003DMT400078045	AT5G01410.1	16766694
AT5G01410.1	PGSC0003DMT400078045	AT5G01410.1	21798944
AT5G01410.1	PGSC0003DMT400020828	AT5G60540.1	16766694

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc06g081980.1.1	Tomato	extracellular, nucleus, plastid, unclear	99.68	99.68
KRH21198	Soybean	endoplasmic reticulum	93.85	93.25
KRH11075	Soybean	endoplasmic reticulum, nucleus	93.53	92.93
AT5G01410.1	Thale cress	cytosol	92.23	92.23
Bra005687.1-P	Field mustard	cytosol	91.91	91.91
CDY11202	Canola	cytosol	91.91	91.91
CDX80774	Canola	cytosol	91.59	91.59
Bra028901.1-P	Field mustard	cytosol	91.26	91.26
CDY04839	Canola	cytosol	91.26	91.26
GSMUA_Achr1P25530_001	Banana	cytosol	73.79	89.06
GSMUA_Achr8P31880_001	Banana	cytosol	79.61	88.81
GSMUA_AchrUn_...	Banana	cytosol	72.82	87.89
CDX93320	Canola	cytosol	81.88	87.54
AT2G38230.1	Thale cress	cytosol	87.38	87.38
AT2G38210.1	Thale cress	cytosol, peroxisome, plastid	22.33	87.34
TraesCS2D01G267800.1	Wheat	cytosol	88.67	86.71
TraesCS2B01G287600.1	Wheat	cytosol	88.67	86.71
HORVU2Hr1G065120.1	Barley	cytosol	88.35	86.39
VIT_06s0004g06640.t01	Wine grape	cytosol	92.56	84.87
Os07t0100200-01	Rice	plasma membrane	87.06	84.59
OQU88300	Sorghum	cytosol	86.41	84.23
TraesCS4D01G133600.1	Wheat	cytosol	84.79	83.44
HORVU4Hr1G027040.2	Barley	cytosol, peroxisome	85.11	83.23
TraesCS4A01G178700.1	Wheat	cytosol	84.47	83.12
TraesCS4B01G138900.1	Wheat	cytosol	84.47	83.12
Os10t0100700-01	Rice	plasma membrane	84.14	83.07
Zm00001d007936_P001	Maize	cytosol	85.11	82.97
Zm00001d018633_P001	Maize	cytosol	85.11	82.97
CDY18400	Canola	cytosol	70.55	82.58
GSMUA_AchrUn_...	Banana	cytosol	71.84	75.25
TraesCS2A01G268800.1	Wheat	plastid	88.67	70.98
Os11t0708500-01	Rice	plasma membrane	79.94	68.04
PGSC0003DMT400014295	Potato	cytosol	64.4	65.25
Zm00001d018632_P001	Maize	extracellular	85.76	64.16
GSMUA_Achr1P27650_001	Banana	cytosol	13.92	51.81
Os10t0191600-00	Rice	plasma membrane	29.45	49.19

Protein Annotations

KEGG:00750+4.3.3.6	EntrezGene:102590002	Gene3D:3.20.20.70	MapMan:7.7.1.1	InterPro:Aldolase_TIM	GO:GO:0003674
GO:GO:0003824	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	GO:GO:0042819
GO:GO:0042823	InterPro:IPR001852	InterPro:IPR013785	UniProt:M1CZB0	HAMAP:MF_01824	PFAM:PF01680
EnsemblPlantsGene:PGSC0003DMG400030359	PGSC:PGSC0003DMG400030359	EnsemblPlants:PGSC0003DMT400078045	PIRSF:PIRSF029271	ScanProsite:PS01235	PFscan:PS51129
PANTHER:PTHR31829	InterPro:PdxS/SNZ	InterPro:PdxS/SNZ_N	InterPro:RibuloseP-bd_barrel	SUPFAM:SSF51366	TIGRFAMs:TIGR00343
UniParc:UPI00029546E8	RefSeq:XP_006350840.1	SEG:seg	:	:	:

Description

Pyridoxine biosynthesis protein isoform A [Source:PGSC_GENE;Acc:PGSC0003DMG400030359]

Coordinates

chr6:+:57230608..57231909

Molecular Weight (calculated)

33148.3 Da

IEP (calculated)

6.259

GRAVY (calculated)

0.032

Length

309 amino acids

Sequence
(BLAST)

001: MAGSGVVTVY GNGALTETTK QSPFSVKVGL AQMLRGGVIM DVVNAEQARI AEEAGACAVM ALERVPADIR AQGGVARMSD PQLIKEIKQA VTIPVMAKAR
101: IGHFVEAQIL EAIGVDYVDE SEVLTLADDE NHINKHNFRI PFVCGCRNLG EALRRIREGA AMIRTKGEAG TGNIIEAVRH VRSVMGDIRV LRNMDDDEVF
201: TFAKKIQAPY DLVMQTKQLG RLPVVHFAAG GVATPADAAL MMQLGCDGVF VGSGIFKSGD PAKRGRAIVQ AVTHYSDPQL LAEISCGLGE AMVGINLDEK
301: VERYANRSE

Best Arabidopsis Sequence Match ( AT5G01410.2 )
(BLAST)

001: MEGTGVVAVY GNGAITEAKK SPFSVKVGLA QMLRGGVIMD VVNAEQARIA EEAGACAVMA LERVPADIRA QGGVARMSDP QMIKEIKQAV TIPVMAKARI
101: GHFVEAQILE AIGIDYIDES EVLTLADEDH HINKHNFRIP FVCGCRNLGE ALRRIREGAA MIRTKGEAGT GNIIEAVRHV RSVNGDIRVL RNMDDDEVFT
201: FAKKLAAPYD LVMQTKQLGR LPVVQFAAGG VATPADAALM MQLGCDGVFV GSGIFKSGDP ARRARAIVQA VTHYSDPEML VEVSCGLGEA MVGINLNDEK
301: VERFANRSE

Arabidopsis Description

PDX13RSR4 [Source:UniProtKB/TrEMBL;Acc:A0A178UIV6]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.