Subcellular Localization
min:
: max
Winner_takes_all: plasma membrane
Predictor Summary:
Predictor Summary:
- nucleus 1
- vacuole 1
- peroxisome 1
- cytosol 3
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
| plasma membrane:
27800704
|
msms PMID:
27800704
doi
Huai'an Institute of Agricultural Sciences, Huai'an, 223001, China., Institute of Analytical Chemistry and Synthetic and Functional Biomolecules Center, College of Chemistry and Molecular Engineering, Peking University, Beijing, 100871, China; and., Northeast Institute of Geography and Agroecology, Key Laboratory of Soybean Molecular Design Breeding, Chinese Academy of Sciences, Harbin, 150081, China., State Key Laboratory of Plant Genomics, Institute of Microbiology, Chinese Academy of Sciences, Beijing, 100101, China.
|
PPI
Inferred distinct locusB in Crop
| locusB | locations |
|---|---|
| Os02t0130100-01 | |
| Os07t0100200-01 | |
| Os10t0100700-01 | |
| Os10t0191600-00 | |
| Os11t0708500-01 |
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Zm00001d018633_P001 | Maize | cytosol | 93.4 | 93.69 |
| Os10t0100700-01 | Rice | plasma membrane | 92.14 | 93.61 |
| OQU88300 | Sorghum | cytosol | 92.14 | 92.43 |
| Zm00001d007936_P001 | Maize | cytosol | 90.88 | 91.17 |
| GSMUA_Achr1P25530_001 | Banana | cytosol | 73.27 | 91.02 |
| GSMUA_Achr8P31880_001 | Banana | cytosol | 78.93 | 90.61 |
| GSMUA_AchrUn_... | Banana | cytosol | 72.33 | 89.84 |
| KRH11075 | Soybean | endoplasmic reticulum, nucleus | 86.16 | 88.1 |
| KRH21198 | Soybean | endoplasmic reticulum | 85.85 | 87.78 |
| Bra028901.1-P | Field mustard | cytosol | 84.91 | 87.38 |
| CDY04839 | Canola | cytosol | 84.91 | 87.38 |
| CDX80774 | Canola | cytosol | 84.59 | 87.06 |
| PGSC0003DMT400078045 | Potato | cytosol | 84.59 | 87.06 |
| Bra005687.1-P | Field mustard | cytosol | 84.28 | 86.73 |
| Solyc06g081980.1.1 | Tomato | extracellular, nucleus, plastid, unclear | 84.28 | 86.73 |
| CDY11202 | Canola | cytosol | 84.28 | 86.73 |
| AT5G01410.1 | Thale cress | cytosol | 84.28 | 86.73 |
| CDX93320 | Canola | cytosol | 76.73 | 84.43 |
| AT2G38230.1 | Thale cress | cytosol | 81.76 | 84.14 |
| CDY18400 | Canola | cytosol | 66.35 | 79.92 |
| VIT_06s0004g06640.t01 | Wine grape | cytosol | 83.33 | 78.64 |
| AT2G38210.1 | Thale cress | cytosol, peroxisome, plastid | 19.18 | 77.22 |
| GSMUA_AchrUn_... | Banana | cytosol | 70.44 | 75.93 |
| Os11t0708500-01 | Rice | plasma membrane | 84.59 | 74.1 |
| Zm00001d018632_P001 | Maize | extracellular | 91.82 | 70.7 |
| Os10t0191600-00 | Rice | plasma membrane | 30.5 | 52.43 |
| GSMUA_Achr1P27650_001 | Banana | cytosol | 13.52 | 51.81 |
Protein Annotations
| KEGG:00750+4.3.3.6 | Gene3D:3.20.20.70 | EntrezGene:4342162 | MapMan:7.7.1.1 | EMBL:AK060986 | EMBL:AK073305 |
| InterPro:Aldolase_TIM | ProteinID:BAD31816.1 | ProteinID:BAE79758.1 | ProteinID:BAF20583.1 | ProteinID:BAS99667.1 | GO:GO:0003674 |
| GO:GO:0003824 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009058 | GO:GO:0009987 | GO:GO:0016829 |
| GO:GO:0036381 | GO:GO:0042819 | GO:GO:0042823 | InterPro:IPR001852 | InterPro:IPR013785 | HAMAP:MF_01824 |
| EnsemblPlantsGene:Os07g0100200 | EnsemblPlants:Os07t0100200-01 | PFAM:PF01680 | PIRSF:PIRSF029271 | ScanProsite:PS01235 | PFscan:PS51129 |
| PANTHER:PTHR31829 | InterPro:PdxS/SNZ | InterPro:PdxS/SNZ_N | UniProt:Q69LA6 | InterPro:RibuloseP-bd_barrel | SUPFAM:SSF51366 |
| TIGRFAMs:TIGR00343 | UniParc:UPI00001BF744 | RefSeq:XP_015646521.1 | SEG:seg | : | : |
Description
PDX11Similar to PDX1-like protein 4. (Os07t0100200-01)
Coordinates
chr7:-:11648..12983
Molecular Weight (calculated)
33738.9 Da
IEP (calculated)
6.878
GRAVY (calculated)
0.066
Length
318 amino acids
Sequence
(BLAST)
(BLAST)
001: MATDGTGVVT VYGSGTNGAA LLEPSNHKSA TFSVKVGLAQ MLRGGVIMDV VTPEQARIAE EAGACAVMAL ERVPADIRAQ GGVARMSDPG LIRDIKRAVT
101: IPVMAKARIG HFVEAQILEA IGVDYVDESE VLTLADDAHH INKHNFRVPF VCGCRDLGEA LRRIREGAAM IRTKGEAGTG NVVEAVRHVR SVMGDIRALR
201: NMDDDEVFSY AKRIAAPYDL VMQTKQLGRL PVVQFAAGGV ATPADAALMM QLGCDGVFVG SGIFKSGDPA RRARAIVQAV THYSDPKILA EVSSGLGEAM
301: VGINLSDPKV ERFAARSE
101: IPVMAKARIG HFVEAQILEA IGVDYVDESE VLTLADDAHH INKHNFRVPF VCGCRDLGEA LRRIREGAAM IRTKGEAGTG NVVEAVRHVR SVMGDIRALR
201: NMDDDEVFSY AKRIAAPYDL VMQTKQLGRL PVVQFAAGGV ATPADAALMM QLGCDGVFVG SGIFKSGDPA RRARAIVQAV THYSDPKILA EVSSGLGEAM
301: VGINLSDPKV ERFAARSE
001: MEGTGVVAVY GNGAITEAKK SPFSVKVGLA QMLRGGVIMD VVNAEQARIA EEAGACAVMA LERVPADIRA QGGVARMSDP QMIKEIKQAV TIPVMAKARI
101: GHFVEAQILE AIGIDYIDES EVLTLADEDH HINKHNFRIP FVCGCRNLGE ALRRIREGAA MIRTKGEAGT GNIIEAVRHV RSVNGDIRVL RNMDDDEVFT
201: FAKKLAAPYD LVMQTKQLGR LPVVQFAAGG VATPADAALM MQLGCDGVFV GSGIFKSGDP ARRARAIVQA VTHYSDPEML VEVSCGLGEA MVGINLNDEK
301: VERFANRSE
101: GHFVEAQILE AIGIDYIDES EVLTLADEDH HINKHNFRIP FVCGCRNLGE ALRRIREGAA MIRTKGEAGT GNIIEAVRHV RSVNGDIRVL RNMDDDEVFT
201: FAKKLAAPYD LVMQTKQLGR LPVVQFAAGG VATPADAALM MQLGCDGVFV GSGIFKSGDP ARRARAIVQA VTHYSDPEML VEVSCGLGEA MVGINLNDEK
301: VERFANRSE
Arabidopsis Description
PDX13RSR4 [Source:UniProtKB/TrEMBL;Acc:A0A178UIV6]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.