CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 1
peroxisome 1
mitochondrion 1
cytosol 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, nucleus, peroxisome
BaCelLo:	nucleus
MultiLoc:	peroxisome
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

Inferred distinct locusB in Crop

locusB	locations
CDX80159
CDX80774
CDY04839
CDY09196
CDY11202
CDY20176
CDY31539
CDY50623

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT2G38230.1	CDY20176	AT3G16050.1	16766694
AT2G38230.1	CDY50623	AT3G16050.1	16766694
AT2G38230.1	CDX80774	AT5G01410.1	16766694
AT2G38230.1	CDY04839	AT5G01410.1	16766694
AT2G38230.1	CDY11202	AT5G01410.1	16766694
AT2G38230.1	CDX80159	AT5G60540.1	16766694
AT2G38230.1	CDY09196	AT5G60540.1	16766694
AT2G38230.1	CDY31539	AT5G60540.1	16766694

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
AT2G38210.1	Thale cress	cytosol, peroxisome, plastid	24.57	89.87
AT2G38230.1	Thale cress	cytosol	93.43	87.38
CDY18400	Canola	cytosol	78.55	85.98
CDX80774	Canola	cytosol	88.58	82.85
CDY04839	Canola	cytosol	88.58	82.85
CDY11202	Canola	cytosol	88.58	82.85
Solyc06g081980.1.1	Tomato	extracellular, nucleus, plastid, unclear	87.54	81.88
PGSC0003DMT400078045	Potato	cytosol	87.54	81.88
KRH21198	Soybean	endoplasmic reticulum	87.54	81.35
KRH11075	Soybean	endoplasmic reticulum, nucleus	86.85	80.71
HORVU2Hr1G065120.1	Barley	cytosol	86.85	79.43
TraesCS2B01G287600.1	Wheat	cytosol	86.51	79.11
TraesCS2D01G267800.1	Wheat	cytosol	86.16	78.8
GSMUA_AchrUn_...	Banana	cytosol	68.86	77.73
GSMUA_Achr8P31880_001	Banana	cytosol	74.39	77.62
GSMUA_Achr1P25530_001	Banana	cytosol	68.17	76.95
TraesCS4B01G138900.1	Wheat	cytosol	83.39	76.75
TraesCS4D01G133600.1	Wheat	cytosol	83.39	76.75
Os07t0100200-01	Rice	plasma membrane	84.43	76.73
HORVU4Hr1G027040.2	Barley	cytosol, peroxisome	83.74	76.58
TraesCS4A01G178700.1	Wheat	cytosol	82.7	76.11
Os10t0100700-01	Rice	plasma membrane	82.35	76.04
Zm00001d007936_P001	Maize	cytosol	83.39	76.03
Zm00001d018633_P001	Maize	cytosol	83.05	75.71
OQU88300	Sorghum	cytosol	82.7	75.39
VIT_06s0004g06640.t01	Wine grape	cytosol	87.2	74.78
GSMUA_AchrUn_...	Banana	cytosol	66.78	65.42
TraesCS2A01G268800.1	Wheat	plastid	86.16	64.51
Os11t0708500-01	Rice	plasma membrane	78.89	62.81
Zm00001d018632_P001	Maize	extracellular	83.05	58.11
CDY20176	Canola	cytosol	57.09	54.28
Os10t0191600-00	Rice	plasma membrane	32.53	50.81
GSMUA_Achr1P27650_001	Banana	cytosol	13.49	46.99
CDY50623	Canola	plastid	59.86	42.93
CDY69119	Canola	mitochondrion	11.07	17.49

Protein Annotations

KEGG:00750+4.3.3.6	Gene3D:3.20.20.70	MapMan:7.7.1.1	GO:A0A078DVE9	InterPro:Aldolase_TIM	EnsemblPlants:CDX93320
ProteinID:CDX93320	ProteinID:CDX93320.1	GO:GO:0003674	GO:GO:0003824	GO:GO:0008150	GO:GO:0008152
GO:GO:0009058	GO:GO:0009987	GO:GO:0042819	GO:GO:0042823	EnsemblPlantsGene:GSBRNA2T00155295001	InterPro:IPR001852
InterPro:IPR013785	PFAM:PF01680	PIRSF:PIRSF029271	ScanProsite:PS01235	PFscan:PS51129	PANTHER:PTHR31829
MetaCyc:PWY-6466	InterPro:PdxS/SNZ	InterPro:PdxS/SNZ_N	InterPro:RibuloseP-bd_barrel	SUPFAM:SSF51366	UniPathway:UPA00245
UniParc:UPI0004EE16C7	SEG:seg	:	:	:	:

Description

BnaC04g45760D

Coordinates

chrLK031875:-:1000961..1002918

Molecular Weight (calculated)

30653.5 Da

IEP (calculated)

7.862

GRAVY (calculated)

0.129

Length

289 amino acids

Sequence
(BLAST)

001: MAESAGVVAV YGEGSMTETK QQSPFSVKVG LAQMLRGGVI MDVVNAEQAR IAEEAGACAV MALERVPADI RAQGGVARMS DPEMIKEIKQ AVTIPVMAKA
101: RIGHFVEAQI LESIGHNFKI PFVCGCRNLG EALRRIREGA AMIRTKGEAG TGNVVEAVRH VRSVMGAIRL LRGMDDDEVF AYAKKIAAPY ELVMQTKQLG
201: RLPVVQFAAG GVATPADAAL MMQLGCDGVF VGSGIFKSGD PAKRAKAIVQ AVTNYRDAAV LAEVSCGLGE AMVGINLDDK VERFANRSE

Best Arabidopsis Sequence Match ( AT2G38230.1 )
(BLAST)

001: MAGTGVVAVY GEGAMTETKQ KSPFSVKVGL AQMLRGGVIM DVVNAEQARI AEEAGACAVM ALERVPADIR AQGGVARMSD PEMIKEIKNA VTIPVMAKAR
101: IGHFVEAQIL EAIGVDYVDE SEVLTLADED NHINKHNFKI PFVCGCRNLG EALRRIREGA AMIRTKGEAG TGNVVEAVRH VRSVNGAIRL LRSMDDDEVF
201: TYAKKIAAPY DLVVQTKELG RLPVVQFAAG GVATPADAAL MMQLGCDGVF VGSGVFKSGD PVKRAKAIVQ AVTNYRDAAV LAEVSCGLGE AMVGLNLDDK
301: VERFASRSE

Arabidopsis Description

PDX11Pyridoxal 5'-phosphate synthase subunit PDX1.1 [Source:UniProtKB/Swiss-Prot;Acc:O80448]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.