Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- cytosol 3
- peroxisome 1
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| AT2G38210.1 | Thale cress | cytosol, peroxisome, plastid | 26.14 | 87.34 |
| CDX93320 | Canola | cytosol | 85.98 | 78.55 |
| AT2G38230.1 | Thale cress | cytosol | 89.39 | 76.38 |
| CDX80774 | Canola | cytosol | 84.09 | 71.84 |
| CDY04839 | Canola | cytosol | 83.71 | 71.52 |
| CDY11202 | Canola | cytosol | 83.71 | 71.52 |
| KRH21198 | Soybean | endoplasmic reticulum | 83.71 | 71.06 |
| PGSC0003DMT400078045 | Potato | cytosol | 82.58 | 70.55 |
| KRH11075 | Soybean | endoplasmic reticulum, nucleus | 82.95 | 70.42 |
| Solyc06g081980.1.1 | Tomato | extracellular, nucleus, plastid, unclear | 82.2 | 70.23 |
| HORVU2Hr1G065120.1 | Barley | cytosol | 82.2 | 68.67 |
| TraesCS2B01G287600.1 | Wheat | cytosol | 82.2 | 68.67 |
| TraesCS2D01G267800.1 | Wheat | cytosol | 81.82 | 68.35 |
| TraesCS4B01G138900.1 | Wheat | cytosol | 79.55 | 66.88 |
| TraesCS4D01G133600.1 | Wheat | cytosol | 79.17 | 66.56 |
| Os10t0100700-01 | Rice | plasma membrane | 78.79 | 66.45 |
| Os07t0100200-01 | Rice | plasma membrane | 79.92 | 66.35 |
| HORVU4Hr1G027040.2 | Barley | cytosol, peroxisome | 79.17 | 66.14 |
| TraesCS4A01G178700.1 | Wheat | cytosol | 78.41 | 65.92 |
| GSMUA_Achr8P31880_001 | Banana | cytosol | 68.18 | 64.98 |
| VIT_06s0004g06640.t01 | Wine grape | cytosol | 82.58 | 64.69 |
| Zm00001d007936_P001 | Maize | cytosol | 77.65 | 64.67 |
| Zm00001d018633_P001 | Maize | cytosol | 77.65 | 64.67 |
| OQU88300 | Sorghum | cytosol | 77.27 | 64.35 |
| GSMUA_AchrUn_... | Banana | cytosol | 61.74 | 63.67 |
| GSMUA_Achr1P25530_001 | Banana | cytosol | 61.36 | 63.28 |
| TraesCS2A01G268800.1 | Wheat | plastid | 81.82 | 55.96 |
| GSMUA_AchrUn_... | Banana | cytosol | 61.36 | 54.92 |
| Os11t0708500-01 | Rice | plasma membrane | 73.48 | 53.44 |
| Zm00001d018632_P001 | Maize | extracellular | 77.65 | 49.64 |
| CDY20176 | Canola | cytosol | 52.65 | 45.72 |
| GSMUA_Achr1P27650_001 | Banana | cytosol | 14.02 | 44.58 |
| Os10t0191600-00 | Rice | plasma membrane | 27.27 | 38.92 |
| CDY50623 | Canola | plastid | 55.3 | 36.23 |
| CDY69119 | Canola | mitochondrion | 10.61 | 15.3 |
Protein Annotations
| KEGG:00730+2.8.1.10 | KEGG:00750+4.3.3.6 | Gene3D:3.20.20.70 | MapMan:7.7.1.1 | GO:A0A078FVD1 | UniProt:A0A078FVD1 |
| InterPro:Aldolase_TIM | EnsemblPlants:CDY18400 | ProteinID:CDY18400 | ProteinID:CDY18400.1 | GO:GO:0003674 | GO:GO:0003824 |
| GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009058 | GO:GO:0009987 | GO:GO:0042819 | GO:GO:0042823 |
| EnsemblPlantsGene:GSBRNA2T00005389001 | InterPro:IPR001852 | InterPro:IPR013785 | PFAM:PF01680 | PFAM:PF05690 | PIRSF:PIRSF029271 |
| ScanProsite:PS01235 | PFscan:PS51129 | PANTHER:PTHR31829 | PANTHER:PTHR31829:SF0 | MetaCyc:PWY-6466 | InterPro:PdxS/SNZ |
| InterPro:PdxS/SNZ_N | InterPro:RibuloseP-bd_barrel | SUPFAM:SSF51366 | InterPro:Thiazole_synthase_ThiG | UniPathway:UPA00245 | UniParc:UPI0004EEE428 |
| SEG:seg | : | : | : | : | : |
Description
BnaA04g21870DBnaA04g21870D protein [Source:UniProtKB/TrEMBL;Acc:A0A078FVD1]
Coordinates
chrLK032085:-:232119..233271
Molecular Weight (calculated)
27989.9 Da
IEP (calculated)
5.815
GRAVY (calculated)
0.079
Length
264 amino acids
Sequence
(BLAST)
(BLAST)
001: MAESTGVVAV YGEGSMTETK QQSPFSVKVG LAQMLRGGVI MDVVNAEQAR IAEEAGACAV MALERVPADI RAQGGILESI GVDYVDESEV LTLADEDNHI
101: NKHNFKIPFV CGCRNLGEAL RRIREGAAMI RTKGEAGTGN VVEAVKHKIA APYELVMQTK QLGRLPVVQF AAGGVATPAD AALMMQLGCD GVFVGSGLFK
201: SGDPAKRAKA IVQAVTNYRD AAVLAEVSCG LGEAMVGINL DDKVERFANR SSKPIREFKC FISV
101: NKHNFKIPFV CGCRNLGEAL RRIREGAAMI RTKGEAGTGN VVEAVKHKIA APYELVMQTK QLGRLPVVQF AAGGVATPAD AALMMQLGCD GVFVGSGLFK
201: SGDPAKRAKA IVQAVTNYRD AAVLAEVSCG LGEAMVGINL DDKVERFANR SSKPIREFKC FISV
001: MAGTGVVAVY GEGAMTETKQ KSPFSVKVGL AQMLRGGVIM DVVNAEQARI AEEAGACAVM ALERVPADIR AQGGVARMSD PEMIKEIKNA VTIPVMAKAR
101: IGHFVEAQIL EAIGVDYVDE SEVLTLADED NHINKHNFKI PFVCGCRNLG EALRRIREGA AMIRTKGEAG TGNVVEAVRH VRSVNGAIRL LRSMDDDEVF
201: TYAKKIAAPY DLVVQTKELG RLPVVQFAAG GVATPADAAL MMQLGCDGVF VGSGVFKSGD PVKRAKAIVQ AVTNYRDAAV LAEVSCGLGE AMVGLNLDDK
301: VERFASRSE
101: IGHFVEAQIL EAIGVDYVDE SEVLTLADED NHINKHNFKI PFVCGCRNLG EALRRIREGA AMIRTKGEAG TGNVVEAVRH VRSVNGAIRL LRSMDDDEVF
201: TYAKKIAAPY DLVVQTKELG RLPVVQFAAG GVATPADAAL MMQLGCDGVF VGSGVFKSGD PVKRAKAIVQ AVTNYRDAAV LAEVSCGLGE AMVGLNLDDK
301: VERFASRSE
Arabidopsis Description
PDX11Pyridoxal 5'-phosphate synthase subunit PDX1.1 [Source:UniProtKB/Swiss-Prot;Acc:O80448]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.