Factsheet for Os11t0708500-01

Subcellular Localization

min:

: max

Winner_takes_all: plasma membrane

Predictor Summary:

cytosol 4
vacuole 1
plastid 1
peroxisome 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

plasma membrane: 27800704

msms PMID: 27800704 doi

J Cao, C Yang, L Li, L Jiang, Y Wu, C Wu, Q Bu, G Xia, X Liu, Y Luo, J Liu

Huai'an Institute of Agricultural Sciences, Huai'an, 223001, China., Institute of Analytical Chemistry and Synthetic and Functional Biomolecules Center, College of Chemistry and Molecular Engineering, Peking University, Beijing, 100871, China; and., Northeast Institute of Geography and Agroecology, Key Laboratory of Soybean Molecular Design Breeding, Chinese Academy of Sciences, Harbin, 150081, China., State Key Laboratory of Plant Genomics, Institute of Microbiology, Chinese Academy of Sciences, Beijing, 100101, China.

PPI

Inferred distinct locusB in Crop

locusB	locations
Os02t0130100-01
Os07t0100200-01
Os10t0100700-01
Os10t0191600-00
Os11t0708500-01

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT2G38230.1	Os07t0100200-01	AT5G01410.1	16766694
AT2G38230.1	Os10t0100700-01	AT5G01410.1	16766694
AT2G38230.1	Os10t0191600-00	AT5G01410.1	16766694
AT2G38230.1	Os11t0708500-01	AT5G01410.1	16766694
AT2G38230.1	Os02t0130100-01	AT5G60540.1	16766694
AT5G01410.1	Os07t0100200-01	AT2G38230.1	16766694
AT5G01410.1	Os10t0100700-01	AT2G38230.1	16766694
AT5G01410.1	Os10t0191600-00	AT2G38230.1	16766694
AT5G01410.1	Os11t0708500-01	AT2G38230.1	16766694
AT5G01410.1	Os07t0100200-01	AT5G01410.1	16766694
AT5G01410.1	Os10t0100700-01	AT5G01410.1	16766694
AT5G01410.1	Os10t0191600-00	AT5G01410.1	16766694
AT5G01410.1	Os11t0708500-01	AT5G01410.1	16766694
AT5G01410.1	Os07t0100200-01	AT5G01410.1	21798944
AT5G01410.1	Os10t0100700-01	AT5G01410.1	21798944
AT5G01410.1	Os10t0191600-00	AT5G01410.1	21798944
AT5G01410.1	Os11t0708500-01	AT5G01410.1	21798944
AT5G01410.1	Os02t0130100-01	AT5G60540.1	16766694

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS4D01G133600.1	Wheat	cytosol	75.48	87.26
TraesCS4B01G138900.1	Wheat	cytosol	75.21	86.94
TraesCS4A01G178700.1	Wheat	cytosol	74.93	86.62
HORVU4Hr1G027040.2	Barley	cytosol, peroxisome	75.21	86.39
Zm00001d018633_P001	Maize	cytosol	74.1	84.86
Os07t0100200-01	Rice	plasma membrane	74.1	84.59
OQU88300	Sorghum	cytosol	73.83	84.54
Os10t0100700-01	Rice	plasma membrane	72.73	84.34
Zm00001d007936_P001	Maize	cytosol	73.55	84.23
GSMUA_Achr8P31880_001	Banana	cytosol	63.09	82.67
GSMUA_Achr1P25530_001	Banana	cytosol	57.85	82.03
GSMUA_AchrUn_...	Banana	cytosol	57.85	82.03
CDY04839	Canola	cytosol	69.15	81.23
Bra028901.1-P	Field mustard	cytosol	69.15	81.23
KRH11075	Soybean	endoplasmic reticulum, nucleus	69.42	81.03
CDX80774	Canola	cytosol	68.87	80.91
Bra005687.1-P	Field mustard	cytosol	68.87	80.91
CDY11202	Canola	cytosol	68.87	80.91
KRH21198	Soybean	endoplasmic reticulum	69.15	80.71
AT5G01410.1	Thale cress	cytosol	68.59	80.58
PGSC0003DMT400078045	Potato	cytosol	68.04	79.94
Solyc06g081980.1.1	Tomato	extracellular, nucleus, plastid, unclear	67.77	79.61
CDX93320	Canola	cytosol	62.81	78.89
AT2G38230.1	Thale cress	cytosol	66.67	78.32
VIT_06s0004g06640.t01	Wine grape	cytosol	68.87	74.18
CDY18400	Canola	cytosol	53.44	73.48
AT2G38210.1	Thale cress	cytosol, peroxisome, plastid	15.98	73.42
GSMUA_AchrUn_...	Banana	cytosol	57.3	70.51
Zm00001d018632_P001	Maize	extracellular	74.1	65.13
Os10t0191600-00	Rice	plasma membrane	26.72	52.43
GSMUA_Achr1P27650_001	Banana	cytosol	10.19	44.58

Protein Annotations

KEGG:00750+4.3.3.6	Gene3D:3.20.20.70	MapMan:7.7.1.1	ProteinID:AAX95426.1	ProteinID:ABA95534.1	EMBL:AK063409
InterPro:Aldolase_TIM	ProteinID:BAF28926.1	ProteinID:BAT15432.1	GO:GO:0003674	GO:GO:0003824	GO:GO:0008150
GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	GO:GO:0042819	GO:GO:0042823	InterPro:IPR001852
InterPro:IPR013785	HAMAP:MF_01824	EnsemblPlantsGene:Os11g0708500	EnsemblPlants:Os11t0708500-01	PFAM:PF01680	ScanProsite:PS01235
PFscan:PS51129	PANTHER:PTHR31829	InterPro:PdxS/SNZ	InterPro:PdxS/SNZ_N	UniProt:Q53NW9	InterPro:RibuloseP-bd_barrel
SUPFAM:SSF51366	TIGRFAMs:TIGR00343	UniParc:UPI00005092C3	SEG:seg	:	:

Description

Vitamin B6 biosynthesis protein family protein. (Os11t0708500-01)

Coordinates

chr11:+:28987446..28988704

Molecular Weight (calculated)

38787.0 Da

IEP (calculated)

6.507

GRAVY (calculated)

0.088

Length

363 amino acids

Sequence
(BLAST)

001: MASSDDGVVA LYGGGKVSCK PPAATFSVKV GLAQMLRGGV IMDVVTPEQA RLAEEAGACA VMALERVPAD IRAQGGVARM SDPALIRDIK RAVTIPVMAK
101: ARIGHFVEAQ ILEAIGVDYV DESEVLTPAD DAHHINKHNF RVPFVCGCRD LGEALRRIRE GAAMIRTKGE AGTGNVVEAV RHVRSVMGEI RALRNMDDDE
201: VFSYAKRIAA PYDLVMQTKQ LGRLPVVQFA AGGVATPADA ALMMQLGCDG VFVGSGIFKS GDPARRARAI VQAVTHYSDP EILADVSAGL GDAMSASTST
301: TKMSSATPPA PTEQLLLLLL LPLSSSLSAP HRWMVNVNQQ SSSLTNFLLT MDWRMDDCCC HYY

Best Arabidopsis Sequence Match ( AT5G01410.2 )
(BLAST)

001: MEGTGVVAVY GNGAITEAKK SPFSVKVGLA QMLRGGVIMD VVNAEQARIA EEAGACAVMA LERVPADIRA QGGVARMSDP QMIKEIKQAV TIPVMAKARI
101: GHFVEAQILE AIGIDYIDES EVLTLADEDH HINKHNFRIP FVCGCRNLGE ALRRIREGAA MIRTKGEAGT GNIIEAVRHV RSVNGDIRVL RNMDDDEVFT
201: FAKKLAAPYD LVMQTKQLGR LPVVQFAAGG VATPADAALM MQLGCDGVFV GSGIFKSGDP ARRARAIVQA VTHYSDPEML VEVSCGLGEA MVGINLNDEK
301: VERFANRSE

Arabidopsis Description

PDX13RSR4 [Source:UniProtKB/TrEMBL;Acc:A0A178UIV6]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.