Factsheet for VIT_06s0004g06640.t01

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

cytosol 4
vacuole 1
peroxisome 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
VIT_06s0004g03000.t01
VIT_06s0004g06640.t01
VIT_09s0002g04490.t01

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT2G38230.1	VIT_09s0002g04490.t01	AT3G16050.1	16766694
AT2G38230.1	VIT_06s0004g06640.t01	AT5G01410.1	16766694
AT2G38230.1	VIT_06s0004g03000.t01	AT5G60540.1	16766694
AT5G01410.1	VIT_06s0004g06640.t01	AT2G38230.1	16766694
AT5G01410.1	VIT_09s0002g04490.t01	AT3G16050.1	16766694
AT5G01410.1	VIT_09s0002g04490.t01	AT3G16050.1	21798944
AT5G01410.1	VIT_06s0004g06640.t01	AT5G01410.1	16766694
AT5G01410.1	VIT_06s0004g06640.t01	AT5G01410.1	21798944
AT5G01410.1	VIT_06s0004g03000.t01	AT5G60540.1	16766694

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Bra005687.1-P	Field mustard	cytosol	85.46	93.2
CDY11202	Canola	cytosol	85.46	93.2
CDX80774	Canola	cytosol	85.16	92.88
Solyc06g081980.1.1	Tomato	extracellular, nucleus, plastid, unclear	85.16	92.88
Bra028901.1-P	Field mustard	cytosol	84.87	92.56
CDY04839	Canola	cytosol	84.87	92.56
PGSC0003DMT400078045	Potato	cytosol	84.87	92.56
KRH21198	Soybean	endoplasmic reticulum	85.16	92.28
AT5G01410.1	Thale cress	cytosol	84.57	92.23
KRH11075	Soybean	endoplasmic reticulum, nucleus	84.57	91.64
AT2G38210.1	Thale cress	cytosol, peroxisome, plastid	20.77	88.61
AT2G38230.1	Thale cress	cytosol	81.01	88.35
CDX93320	Canola	cytosol	74.78	87.2
GSMUA_Achr8P31880_001	Banana	cytosol	71.51	87.0
GSMUA_Achr1P25530_001	Banana	cytosol	65.58	86.33
GSMUA_AchrUn_...	Banana	cytosol	65.28	85.94
TraesCS2D01G267800.1	Wheat	cytosol	80.42	85.76
TraesCS2B01G287600.1	Wheat	cytosol	80.42	85.76
HORVU2Hr1G065120.1	Barley	cytosol	80.12	85.44
OQU88300	Sorghum	cytosol	78.64	83.6
Os07t0100200-01	Rice	plasma membrane	78.64	83.33
TraesCS4B01G138900.1	Wheat	cytosol	77.45	83.12
TraesCS4D01G133600.1	Wheat	cytosol	77.15	82.8
Zm00001d007936_P001	Maize	cytosol	77.74	82.65
HORVU4Hr1G027040.2	Barley	cytosol, peroxisome	77.45	82.59
CDY18400	Canola	cytosol	64.69	82.58
TraesCS4A01G178700.1	Wheat	cytosol	76.85	82.48
Zm00001d018633_P001	Maize	cytosol	77.45	82.33
Os10t0100700-01	Rice	plasma membrane	75.96	81.79
GSMUA_AchrUn_...	Banana	cytosol	64.69	73.9
TraesCS2A01G268800.1	Wheat	plastid	80.42	70.21
Os11t0708500-01	Rice	plasma membrane	74.18	68.87
VIT_09s0002g04490.t01	Wine grape	cytosol	56.97	65.53
Zm00001d018632_P001	Maize	extracellular	78.04	63.68
Os10t0191600-00	Rice	plasma membrane	28.78	52.43
GSMUA_Achr1P27650_001	Banana	cytosol	12.76	51.81

Protein Annotations

KEGG:00750+4.3.3.6	EntrezGene:100260451	wikigene:100260451	Gene3D:3.20.20.70	MapMan:7.7.1.1	InterPro:Aldolase_TIM
ProteinID:CCB43477	ProteinID:CCB43477.1	UniProt:F6GUR4	EMBL:FN594951	GO:GO:0003674	GO:GO:0003824
GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	GO:GO:0042819	GO:GO:0042823
InterPro:IPR001852	InterPro:IPR013785	EntrezGene:LOC100260451	wikigene:LOC100260451	HAMAP:MF_01824	PFAM:PF01680
PIRSF:PIRSF029271	ScanProsite:PS01235	PFscan:PS51129	PANTHER:PTHR31829	InterPro:PdxS/SNZ	InterPro:PdxS/SNZ_N
InterPro:RibuloseP-bd_barrel	SUPFAM:SSF51366	TIGR:TC62871	TIGRFAMs:TIGR00343	UniParc:UPI0002108947	ArrayExpress:VIT_06s0004g06640
EnsemblPlantsGene:VIT_06s0004g06640	EnsemblPlants:VIT_06s0004g06640.t01	unigene:Vvi.1169	RefSeq:XP_002278391	RefSeq:XP_002278391.1	SEG:seg

Description

No Description!

Coordinates

chr6:+:7357700..7359483

Molecular Weight (calculated)

36310.9 Da

IEP (calculated)

6.787

GRAVY (calculated)

0.023

Length

337 amino acids

Sequence
(BLAST)

001: MAGSGVVTVY GNGAITETKK SPFSVKVGLA QMLRGGVIMD VVNAEQARIA EEAGACAVMA LERVPADIRA QGGVARMSDP SLIKEIKQAV TIPVMAKARI
101: GHFVEAQILE AIGIDYVDES EVLTVADEDN HINKHNFRIP FVCGCRNLGE ALRRIREGAA MIRTKGEAGT GNIVEAVRHV RSVMGEIRVL RNMDDDEVFT
201: YAKKLSAPYD LVMQTKQLGR LPVVHFAAGG VATPADAALM MQLGCDGVFV GSGVFKSGDP ARRARAIVQA VTHYSDPDVL AEVSCGLGEA MVGINLNDDK
301: VERYANRSDH HLSVDVYIER KTKAAWQLIC HTFSGSF

Best Arabidopsis Sequence Match ( AT5G01410.2 )
(BLAST)

001: MEGTGVVAVY GNGAITEAKK SPFSVKVGLA QMLRGGVIMD VVNAEQARIA EEAGACAVMA LERVPADIRA QGGVARMSDP QMIKEIKQAV TIPVMAKARI
101: GHFVEAQILE AIGIDYIDES EVLTLADEDH HINKHNFRIP FVCGCRNLGE ALRRIREGAA MIRTKGEAGT GNIIEAVRHV RSVNGDIRVL RNMDDDEVFT
201: FAKKLAAPYD LVMQTKQLGR LPVVQFAAGG VATPADAALM MQLGCDGVFV GSGIFKSGDP ARRARAIVQA VTHYSDPEML VEVSCGLGEA MVGINLNDEK
301: VERFANRSE

Arabidopsis Description

PDX13RSR4 [Source:UniProtKB/TrEMBL;Acc:A0A178UIV6]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.