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Wheat
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Wheat
Subcellular Localization
min:
: max

 
Winner_takes_all: cytosol

Predictor Summary:
  • mitochondrion 2
  • peroxisome 1
  • cytosol 2
Predictors GFP MS/MS Papers
Winner Takes All:cytosol
Any Predictor:cytosol, mitochondrion, peroxisome
iPSORT:mitochondrion
MultiLoc:peroxisome
PProwler:mitochondrion
WoLF PSORT:cytosol
YLoc:cytosol
PPI

Inferred distinct locusB in Crop

locusBlocations
TraesCS2A01G268800.1
TraesCS2B01G287600.1
TraesCS2D01G267800.1
TraesCS4A01G013200.2
TraesCS4A01G178700.1
TraesCS4B01G138900.1
TraesCS4B01G291200.1
TraesCS4D01G133600.1
TraesCS4D01G289800.1
TraesCS6A01G084600.1
TraesCS6B01G117600.1
TraesCSU01G113600.1

Inferred from Arabidopsis experimental PPI

Ath locusAlocusBAth locusBPaper
AT2G38230.1 TraesCS2A01G268800.1 AT5G01410.1 16766694
AT2G38230.1 TraesCS2B01G287600.1 AT5G01410.1 16766694
AT2G38230.1 TraesCS2D01G267800.1 AT5G01410.1 16766694
AT2G38230.1 TraesCS4A01G178700.1 AT5G01410.1 16766694
AT2G38230.1 TraesCS4B01G138900.1 AT5G01410.1 16766694
AT2G38230.1 TraesCS4D01G133600.1 AT5G01410.1 16766694
AT2G38230.1 TraesCS4A01G013200.2 AT5G60540.1 16766694
AT2G38230.1 TraesCS4B01G291200.1 AT5G60540.1 16766694
AT2G38230.1 TraesCS4D01G289800.1 AT5G60540.1 16766694
AT2G38230.1 TraesCS6A01G084600.1 AT5G60540.1 16766694
AT2G38230.1 TraesCS6B01G117600.1 AT5G60540.1 16766694
AT2G38230.1 TraesCSU01G113600.1 AT5G60540.1 16766694
AT5G01410.1 TraesCS2A01G268800.1 AT2G38230.1 16766694
AT5G01410.1 TraesCS2B01G287600.1 AT2G38230.1 16766694
AT5G01410.1 TraesCS2D01G267800.1 AT2G38230.1 16766694
AT5G01410.1 TraesCS4A01G178700.1 AT2G38230.1 16766694
AT5G01410.1 TraesCS4B01G138900.1 AT2G38230.1 16766694
AT5G01410.1 TraesCS4D01G133600.1 AT2G38230.1 16766694
AT5G01410.1 TraesCS2A01G268800.1 AT5G01410.1 16766694
AT5G01410.1 TraesCS2B01G287600.1 AT5G01410.1 16766694
AT5G01410.1 TraesCS2D01G267800.1 AT5G01410.1 16766694
AT5G01410.1 TraesCS4A01G178700.1 AT5G01410.1 16766694
AT5G01410.1 TraesCS4B01G138900.1 AT5G01410.1 16766694
AT5G01410.1 TraesCS4D01G133600.1 AT5G01410.1 16766694
AT5G01410.1 TraesCS2A01G268800.1 AT5G01410.1 21798944
AT5G01410.1 TraesCS2B01G287600.1 AT5G01410.1 21798944
AT5G01410.1 TraesCS2D01G267800.1 AT5G01410.1 21798944
AT5G01410.1 TraesCS4A01G178700.1 AT5G01410.1 21798944
AT5G01410.1 TraesCS4B01G138900.1 AT5G01410.1 21798944
AT5G01410.1 TraesCS4D01G133600.1 AT5G01410.1 21798944
AT5G01410.1 TraesCS4A01G013200.2 AT5G60540.1 16766694
AT5G01410.1 TraesCS4B01G291200.1 AT5G60540.1 16766694
AT5G01410.1 TraesCS4D01G289800.1 AT5G60540.1 16766694
AT5G01410.1 TraesCS6A01G084600.1 AT5G60540.1 16766694
AT5G01410.1 TraesCS6B01G117600.1 AT5G60540.1 16766694
AT5G01410.1 TraesCSU01G113600.1 AT5G60540.1 16766694
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
TraesCS4D01G133600.1 Wheat cytosol 98.09 98.09
TraesCS4B01G138900.1 Wheat cytosol 97.45 97.45
HORVU4Hr1G027040.2 Barley cytosol, peroxisome 96.82 96.2
OQU88300 Sorghum cytosol 89.81 88.96
Zm00001d007936_P001 Maize cytosol 89.49 88.64
Zm00001d018633_P001 Maize cytosol 88.85 88.01
GSMUA_Achr8P31880_001 Banana cytosol 75.8 85.92
GSMUA_AchrUn_... Banana cytosol 69.75 85.55
GSMUA_Achr1P25530_001 Banana cytosol 69.75 85.55
CDY04839 Canola cytosol 83.76 85.11
Bra028901.1-P Field mustard cytosol 83.76 85.11
KRH11075 Soybean endoplasmic reticulum, nucleus 84.08 84.89
CDY11202 Canola cytosol 83.44 84.79
Bra005687.1-P Field mustard cytosol 83.44 84.79
CDX80774 Canola cytosol 83.44 84.79
KRH21198 Soybean endoplasmic reticulum 83.76 84.57
AT5G01410.1 Thale cress cytosol 83.12 84.47
PGSC0003DMT400078045 Potato cytosol 83.12 84.47
Solyc06g081980.1.1 Tomato extracellular, nucleus, plastid, unclear 82.8 84.14
CDX93320 Canola cytosol 76.11 82.7
AT2G38230.1 Thale cress cytosol 81.21 82.52
CDY18400 Canola cytosol 65.92 78.41
AT2G38210.1 Thale cress cytosol, peroxisome, plastid 19.43 77.22
VIT_06s0004g06640.t01 Wine grape cytosol 82.48 76.85
Os11t0708500-01 Rice plasma membrane 86.62 74.93
GSMUA_AchrUn_... Banana cytosol 67.83 72.2
TraesCS2A01G268800.1 Wheat plastid 86.62 70.47
Zm00001d018632_P001 Maize extracellular 89.81 68.28
GSMUA_Achr1P27650_001 Banana cytosol 12.74 48.19
Protein Annotations
KEGG:00750+4.3.3.6Gene3D:3.20.20.70MapMan:7.7.1.1InterPro:Aldolase_TIMGO:GO:0003674GO:GO:0003824
GO:GO:0008150GO:GO:0008152GO:GO:0009058GO:GO:0009987GO:GO:0042819GO:GO:0042823
InterPro:IPR001852InterPro:IPR013785HAMAP:MF_01824PFAM:PF01680PIRSF:PIRSF029271ScanProsite:PS01235
PFscan:PS51129PANTHER:PTHR31829InterPro:PdxS/SNZInterPro:PdxS/SNZ_NInterPro:RibuloseP-bd_barrelSUPFAM:SSF51366
TIGRFAMs:TIGR00343EnsemblPlantsGene:TraesCS4A01G178700EnsemblPlants:TraesCS4A01G178700.1TIGR:cd04727SEG:seg:
Description
No Description!
Coordinates
chr4A:-:451594295..451595239
Molecular Weight (calculated)
33215.3 Da
IEP (calculated)
6.630
GRAVY (calculated)
0.143
Length
314 amino acids
Sequence
(BLAST)
001: MASDGVVALY GNNKAVVEPS AKPAAATFSV KVGLAQMLRG GVIMDVVTAE QARLAEEAGA CAVMALERVP ADIRAQGGVA RMSDPALIRD IKRAVTIPVM
101: AKARIGHFVE AQILEAIGVD YVDESEVLTL ADDAHHINKH NFRVPFVCGC RDLGEALRRI REGAAMIHTK GEAGTGNVVE AVRHVRSVMG AVRALRNMDE
201: DEVFSYAKQI AAPYDLVMQT KQLGRLPVVQ FAAGGVATPA DAALMMQLGC DGVFVGSGIF KSGDPARRAR AIVQAVTHYS DPEILANVSA GLGEAMVGIN
301: LSDPNVERFA ARSQ
Best Arabidopsis Sequence Match ( AT2G38210.1 )
(BLAST)
1: MAGTGVVAVY GEGAMTETKQ KSPFSVKVGL AQMLRGGVIM DVVNAEQARI AEEAGACAVM ALERVPADIR AQGGVARFC
Arabidopsis Description
PDX1L4Pyridoxal 5'-phosphate synthase PDX1-like 4 [Source:UniProtKB/Swiss-Prot;Acc:O80446]
SUBAcon: [peroxisome,plastid,cytosol]
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.