Factsheet for TraesCS6B01G117600.1

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

mitochondrion 2
plastid 1
cytosol 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, plastid
MultiLoc:	mitochondrion
Predotar:	plastid
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

Inferred distinct locusB in Crop

locusB	locations
TraesCS2A01G268800.1
TraesCS2B01G287600.1
TraesCS2D01G267800.1
TraesCS4A01G178700.1
TraesCS4B01G138900.1
TraesCS4D01G133600.1

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G60540.1	TraesCS2A01G268800.1	AT2G38230.1	16766694
AT5G60540.1	TraesCS2B01G287600.1	AT2G38230.1	16766694
AT5G60540.1	TraesCS2D01G267800.1	AT2G38230.1	16766694
AT5G60540.1	TraesCS4A01G178700.1	AT2G38230.1	16766694
AT5G60540.1	TraesCS4B01G138900.1	AT2G38230.1	16766694
AT5G60540.1	TraesCS4D01G133600.1	AT2G38230.1	16766694
AT5G60540.1	TraesCS2A01G268800.1	AT5G01410.1	16766694
AT5G60540.1	TraesCS2B01G287600.1	AT5G01410.1	16766694
AT5G60540.1	TraesCS2D01G267800.1	AT5G01410.1	16766694
AT5G60540.1	TraesCS4A01G178700.1	AT5G01410.1	16766694
AT5G60540.1	TraesCS4B01G138900.1	AT5G01410.1	16766694
AT5G60540.1	TraesCS4D01G133600.1	AT5G01410.1	16766694

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS6A01G084600.1	Wheat	cytosol	99.22	99.22
TraesCSU01G113600.1	Wheat	cytosol, mitochondrion	98.44	98.44
HORVU6Hr1G015450.1	Barley	cytosol, mitochondrion	95.31	95.31
KXG29380	Sorghum	cytosol	86.72	87.06
Os02t0130100-01	Rice	cytosol	85.94	86.27
Zm00001d053981_P002	Maize	cytosol	86.72	85.71
TraesCS4B01G291200.1	Wheat	cytosol	85.55	70.42
GSMUA_Achr7P07370_001	Banana	cytosol	67.97	68.77
VIT_06s0004g03000.t01	Wine grape	cytosol	66.8	67.86
KRH65766	Soybean	cytosol	65.62	66.14
KRH75883	Soybean	cytosol	66.41	65.89
PGSC0003DMT400020828	Potato	cytosol	62.5	63.74
AT5G60540.1	Thale cress	cytosol	63.28	63.53
CDY31539	Canola	cytosol	62.5	63.49
Bra002473.1-P	Field mustard	cytosol	62.5	63.49
Solyc11g069290.1.1	Tomato	plastid	61.72	62.95
CDY09196	Canola	cytosol	55.47	61.47
CDX80159	Canola	cytosol	48.44	60.49
KRH75832	Soybean	cytosol	22.27	58.76

Protein Annotations

KEGG:00220+3.5.1.2	KEGG:00250+3.5.1.2	KEGG:00471+3.5.1.2	KEGG:00750+4.3.3.6	Gene3D:3.40.50.880	MapMan:7.7.1.2
InterPro:Class_I_gatase-like	GO:GO:0003674	GO:GO:0003824	GO:GO:0004359	GO:GO:0008150	GO:GO:0008152
GO:GO:0009058	GO:GO:0009987	GO:GO:0016787	GO:GO:0042819	GO:GO:0042823	InterPro:IPR002161
InterPro:IPR029062	HAMAP:MF_01615	PFAM:PF01174	PIRSF:PIRSF005639	ScanProsite:PS01236	PFscan:PS51130
PANTHER:PTHR31559	InterPro:PdxT/SNO	InterPro:PdxT/SNO_CS	SUPFAM:SSF52317	TIGRFAMs:TIGR03800	EnsemblPlantsGene:TraesCS6B01G117600
EnsemblPlants:TraesCS6B01G117600.1	TIGR:cd01749	SEG:seg	:	:	:

Description

No Description!

Coordinates

chr6B:+:109141595..109143509

Molecular Weight (calculated)

27232.7 Da

IEP (calculated)

5.954

GRAVY (calculated)

0.007

Length

256 amino acids

Sequence
(BLAST)

001: MAAVVGVLAL QGSYNEHMAA LRRIGAKGVE VRKAEQLLGI DSLIIPGGES TTMAKLANFH NLFPALREFV GTGKPVWGTC AGLIFLANKA VGQKTGGQEL
101: VGGLDCTVHR NFFGSQLQSF ETELSVPMLA EKEGGSHTCR GVFIRAPAIL EVGQDVEVLA DCPVPAGRPS ITITSGEGLE DQVYSKDRVI VAVRQGNILA
201: TAFHPELTSD SRWHRLFMDM DKESQAKALA ALSLSASSND ADVGSKNKGP DLPIFE

Best Arabidopsis Sequence Match ( AT5G60540.1 )
(BLAST)

001: MTVGVLALQG SFNEHIAALR RLGVQGVEIR KADQLLTVSS LIIPGGESTT MAKLAEYHNL FPALREFVKM GKPVWGTCAG LIFLADRAVG QKEGGQELVG
101: GLDCTVHRNF FGSQIQSFEA DILVPQLTSQ EGGPETYRGV FIRAPAVLDV GPDVEVLADY PVPSNKVLYS SSTVQIQEED ALPETKVIVA VKQGNLLATA
201: FHPELTADTR WHSYFIKMTK EIEQGASSSS SKTIVSVGET SAGPEPAKPD LPIFQ

Arabidopsis Description

PDX2PDX2 [Source:UniProtKB/TrEMBL;Acc:A0A178UA48]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.