CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

extracellular 2
endoplasmic reticulum 1
vacuole 1
plasma membrane 1
golgi 1
cytosol 3
plastid 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, plastid, secretory
BaCelLo:	secretory
EpiLoc:	cytosol
MultiLoc:	cytosol
Plant-mPloc:	plastid
PProwler:	mitochondrion
WoLF PSORT:	extracellular
YLoc:	cytosol

PPI

Inferred distinct locusB in Crop

locusB	locations
KRH11075
KRH21198

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G60540.1	KRH11075	AT2G38230.1	16766694
AT5G60540.1	KRH21198	AT2G38230.1	16766694
AT5G60540.1	KRH11075	AT5G01410.1	16766694
AT5G60540.1	KRH21198	AT5G01410.1	16766694

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH65766	Soybean	cytosol	84.54	32.28
KRH75883	Soybean	cytosol	81.44	30.62
CDX80159	Canola	cytosol	61.86	29.27
VIT_06s0004g03000.t01	Wine grape	cytosol	69.07	26.59
CDY09196	Canola	cytosol	60.82	25.54
Bra002473.1-P	Field mustard	cytosol	62.89	24.21
CDY31539	Canola	cytosol	62.89	24.21
AT5G60540.1	Thale cress	cytosol	62.89	23.92
KXG29380	Sorghum	cytosol	58.76	22.35
HORVU6Hr1G015450.1	Barley	cytosol, mitochondrion	58.76	22.27
TraesCS6B01G117600.1	Wheat	cytosol	58.76	22.27
TraesCS6A01G084600.1	Wheat	cytosol	58.76	22.27
Zm00001d053981_P002	Maize	cytosol	58.76	22.01
TraesCSU01G113600.1	Wheat	cytosol, mitochondrion	57.73	21.88
GSMUA_Achr7P07370_001	Banana	cytosol	56.7	21.74
Os02t0130100-01	Rice	cytosol	56.7	21.57
PGSC0003DMT400020828	Potato	cytosol	55.67	21.51
Solyc11g069290.1.1	Tomato	plastid	54.64	21.12
TraesCS4D01G289800.1	Wheat	plastid	56.7	19.37
TraesCS4A01G013200.2	Wheat	cytosol	55.67	19.22
TraesCS4B01G291200.1	Wheat	cytosol	56.7	17.68
HORVU4Hr1G075840.3	Barley	mitochondrion	57.73	15.82

Protein Annotations

KEGG:00220+3.5.1.2	KEGG:00250+3.5.1.2	KEGG:00471+3.5.1.2	KEGG:00750+4.3.3.6	Gene3D:3.40.50.880	MapMan:7.7.1.2
EMBL:ACUP02000501	InterPro:Class_I_gatase-like	EnsemblPlantsGene:GLYMA_01G112800	GO:GO:0003674	GO:GO:0003824	GO:GO:0004359
GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0005829	GO:GO:0008150
GO:GO:0008152	GO:GO:0008614	GO:GO:0009058	GO:GO:0009987	GO:GO:0016787	GO:GO:0042819
GO:GO:0042823	GO:GO:1903600	InterPro:IPR002161	InterPro:IPR029062	UniProt:K7K364	EnsemblPlants:KRH75832
ProteinID:KRH75832	ProteinID:KRH75832.1	PFAM:PF01174	PFscan:PS51130	PANTHER:PTHR31559	MetaCyc:PWY-6466
InterPro:PdxT/SNO	SUPFAM:SSF52317	UniParc:UPI00023BF119	:	:	:

Description

hypothetical protein

Coordinates

chr1:-:38587201..38587900

Molecular Weight (calculated)

10328.3 Da

IEP (calculated)

4.142

GRAVY (calculated)

0.180

Length

97 amino acids

Sequence
(BLAST)

1: MTNIISGQKT GGQYLVGGLD CTVHINFFGS QIQSFEAELL VPELVSKEGG PESFCGIFIH APAILEAGPK VQVLADYPVP SSKLLSFDSS IEDQTVN

Best Arabidopsis Sequence Match ( AT5G60540.1 )
(BLAST)

001: MTVGVLALQG SFNEHIAALR RLGVQGVEIR KADQLLTVSS LIIPGGESTT MAKLAEYHNL FPALREFVKM GKPVWGTCAG LIFLADRAVG QKEGGQELVG
101: GLDCTVHRNF FGSQIQSFEA DILVPQLTSQ EGGPETYRGV FIRAPAVLDV GPDVEVLADY PVPSNKVLYS SSTVQIQEED ALPETKVIVA VKQGNLLATA
201: FHPELTADTR WHSYFIKMTK EIEQGASSSS SKTIVSVGET SAGPEPAKPD LPIFQ

Arabidopsis Description

PDX2PDX2 [Source:UniProtKB/TrEMBL;Acc:A0A178UA48]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.