Factsheet for GSMUA_Achr7P07370_001

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 1
cytosol 5
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
EpiLoc:	cytosol
MultiLoc:	cytosol
Plant-mPloc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

Inferred distinct locusB in Crop

locusB	locations
GSMUA_Achr1P25530_001
GSMUA_Achr1P27650_001
GSMUA_Achr8P31880_001
GSMUA_AchrUn_...
GSMUA_AchrUn_...

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G60540.1	GSMUA_Achr1P25530_001	AT2G38230.1	16766694
AT5G60540.1	GSMUA_Achr1P27650_001	AT2G38230.1	16766694
AT5G60540.1	GSMUA_Achr8P31880_001	AT2G38230.1	16766694
AT5G60540.1	GSMUA_AchrUn_...	AT2G38230.1	16766694
AT5G60540.1	GSMUA_AchrUn_...	AT2G38230.1	16766694
AT5G60540.1	GSMUA_Achr1P25530_001	AT5G01410.1	16766694
AT5G60540.1	GSMUA_Achr1P27650_001	AT5G01410.1	16766694
AT5G60540.1	GSMUA_Achr8P31880_001	AT5G01410.1	16766694
AT5G60540.1	GSMUA_AchrUn_...	AT5G01410.1	16766694
AT5G60540.1	GSMUA_AchrUn_...	AT5G01410.1	16766694

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KXG29380	Sorghum	cytosol	72.73	72.16
Zm00001d053981_P002	Maize	cytosol	72.73	71.04
Os02t0130100-01	Rice	cytosol	70.75	70.2
HORVU6Hr1G015450.1	Barley	cytosol, mitochondrion	69.96	69.14
VIT_06s0004g03000.t01	Wine grape	cytosol	68.38	68.65
TraesCSU01G113600.1	Wheat	cytosol, mitochondrion	69.17	68.36
TraesCS6A01G084600.1	Wheat	cytosol	69.17	68.36
TraesCS6B01G117600.1	Wheat	cytosol	68.77	67.97
CDY31539	Canola	cytosol	64.82	65.08
Bra002473.1-P	Field mustard	cytosol	64.82	65.08
KRH65766	Soybean	cytosol	65.22	64.96
PGSC0003DMT400020828	Potato	cytosol	63.64	64.14
Solyc11g069290.1.1	Tomato	plastid	63.64	64.14
AT5G60540.1	Thale cress	cytosol	64.43	63.92
KRH75883	Soybean	cytosol	64.43	63.18
TraesCS4D01G289800.1	Wheat	plastid	70.75	63.03
CDX80159	Canola	cytosol	48.22	59.51
CDY09196	Canola	cytosol	54.15	59.31
TraesCS4B01G291200.1	Wheat	cytosol	70.75	57.56
KRH75832	Soybean	cytosol	21.74	56.7
HORVU4Hr1G075840.3	Barley	mitochondrion	73.12	52.26
TraesCS4A01G013200.2	Wheat	cytosol	51.78	46.62

Protein Annotations

KEGG:00220+3.5.1.2	KEGG:00250+3.5.1.2	KEGG:00471+3.5.1.2	KEGG:00750+4.3.3.6	Gene3D:3.40.50.880	MapMan:7.7.1.2
InterPro:Class_I_gatase-like	GO:GO:0003674	GO:GO:0003824	GO:GO:0004359	GO:GO:0005488	GO:GO:0005515
GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0005829	GO:GO:0008150
GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	GO:GO:0016787	GO:GO:0042819	GO:GO:0042823
GO:GO:0046982	EnsemblPlantsGene:GSMUA_Achr7G07370_001	EnsemblPlants:GSMUA_Achr7P07370_001	EnsemblPlants:GSMUA_Achr7T07370_001	InterPro:IPR002161	InterPro:IPR029062
UniProt:M0TFH7	HAMAP:MF_01615	PFAM:PF01174	PIRSF:PIRSF005639	ScanProsite:PS01236	PFscan:PS51130
PANTHER:PTHR31559	InterPro:PdxT/SNO	InterPro:PdxT/SNO_CS	SUPFAM:SSF52317	TIGRFAMs:TIGR03800	UniParc:UPI000296BC56
SEG:seg	:	:	:	:	:

Description

Pyridoxal biosynthesis protein PDX2 [Source:GMGC_GENE;Acc:GSMUA_Achr7G07370_001]

Coordinates

chr7:-:5496298..5499682

Molecular Weight (calculated)

27601.3 Da

IEP (calculated)

5.701

GRAVY (calculated)

-0.086

Length

253 amino acids

Sequence
(BLAST)

001: MTTVGVLALQ GSFNEHMAAL RRIGVKGVEI RKAEQLQAVD ALIIPGGEST TMAKLAHYHN LFPALREFVS TGKPVWGTCA GLIFLANKAI GQKSGGQELI
101: GGLDCIVNRN FFGSQLQSFE TELSVPKLAE EEGGPNGFRG VFIRAPAILE VGPDVEILAD CPVPLETKKS IMSVDNGQEE EIVSRERVIV AVRQGNLLGT
201: AFHPELTTDL RWHSLFLKMK KDSSDRCLQR VPTSGTDLED SLGKRPFDLP IYE

Best Arabidopsis Sequence Match ( AT5G60540.1 )
(BLAST)

001: MTVGVLALQG SFNEHIAALR RLGVQGVEIR KADQLLTVSS LIIPGGESTT MAKLAEYHNL FPALREFVKM GKPVWGTCAG LIFLADRAVG QKEGGQELVG
101: GLDCTVHRNF FGSQIQSFEA DILVPQLTSQ EGGPETYRGV FIRAPAVLDV GPDVEVLADY PVPSNKVLYS SSTVQIQEED ALPETKVIVA VKQGNLLATA
201: FHPELTADTR WHSYFIKMTK EIEQGASSSS SKTIVSVGET SAGPEPAKPD LPIFQ

Arabidopsis Description

PDX2PDX2 [Source:UniProtKB/TrEMBL;Acc:A0A178UA48]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.