Factsheet for Zm00001d053981_P002

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

cytosol 3
mitochondrion 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion
MultiLoc:	cytosol
PProwler:	mitochondrion
TargetP:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

Inferred distinct locusB in Crop

locusB	locations
Zm00001d007936_P001
Zm00001d018632_P001
Zm00001d018633_P001

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G60540.1	Zm00001d007936_P001	AT2G38230.1	16766694
AT5G60540.1	Zm00001d018632_P001	AT2G38230.1	16766694
AT5G60540.1	Zm00001d018633_P001	AT2G38230.1	16766694
AT5G60540.1	Zm00001d007936_P001	AT5G01410.1	16766694
AT5G60540.1	Zm00001d018632_P001	AT5G01410.1	16766694
AT5G60540.1	Zm00001d018633_P001	AT5G01410.1	16766694

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KXG29380	Sorghum	cytosol	94.98	96.47
Os02t0130100-01	Rice	cytosol	87.64	89.02
TraesCS6A01G084600.1	Wheat	cytosol	86.1	87.11
TraesCSU01G113600.1	Wheat	cytosol, mitochondrion	85.71	86.72
TraesCS6B01G117600.1	Wheat	cytosol	85.71	86.72
HORVU6Hr1G015450.1	Barley	cytosol, mitochondrion	85.33	86.33
TraesCS4D01G289800.1	Wheat	plastid	87.64	79.93
TraesCS4B01G291200.1	Wheat	cytosol	88.03	73.31
GSMUA_Achr7P07370_001	Banana	cytosol	71.04	72.73
VIT_06s0004g03000.t01	Wine grape	cytosol	67.57	69.44
KRH65766	Soybean	cytosol	67.18	68.5
KRH75883	Soybean	cytosol	67.95	68.22
AT5G60540.1	Thale cress	cytosol	64.09	65.1
CDY31539	Canola	cytosol	62.93	64.68
Bra002473.1-P	Field mustard	cytosol	62.93	64.68
HORVU4Hr1G075840.3	Barley	mitochondrion	88.03	64.41
PGSC0003DMT400020828	Potato	cytosol	61.78	63.74
Solyc11g069290.1.1	Tomato	plastid	61.78	63.74
CDY09196	Canola	cytosol	55.21	61.9
TraesCS4A01G013200.2	Wheat	cytosol	66.8	61.57
CDX80159	Canola	cytosol	48.26	60.98
KRH75832	Soybean	cytosol	22.01	58.76

Protein Annotations

KEGG:00220+3.5.1.2	KEGG:00250+3.5.1.2	KEGG:00471+3.5.1.2	KEGG:00750+4.3.3.6	EntrezGene:100280887	Gene3D:3.40.50.880
MapMan:7.7.1.2	UniProt:A0A1D6QU12	ProteinID:AQK60905.1	InterPro:Class_I_gatase-like	GO:GO:0003674	GO:GO:0003824
GO:GO:0004359	GO:GO:0005488	GO:GO:0005515	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623
GO:GO:0005737	GO:GO:0005829	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987
GO:GO:0016787	GO:GO:0042819	GO:GO:0042823	GO:GO:0046982	InterPro:IPR002161	InterPro:IPR029062
HAMAP:MF_01615	PFAM:PF01174	PIRSF:PIRSF005639	ScanProsite:PS01236	PFscan:PS51130	PANTHER:PTHR31559
InterPro:PdxT/SNO	InterPro:PdxT/SNO_CS	SUPFAM:SSF52317	TIGRFAMs:TIGR03800	UniParc:UPI0004DEC8E1	EnsemblPlantsGene:Zm00001d053981
EnsemblPlants:Zm00001d053981_P002	EnsemblPlants:Zm00001d053981_T002	SEG:seg	:	:	:

Description

small kernel2Probable pyridoxal 5'-phosphate synthase subunit PDX2

Coordinates

chr4:-:244568059..244571524

Molecular Weight (calculated)

28017.6 Da

IEP (calculated)

5.181

GRAVY (calculated)

-0.067

Length

259 amino acids

Sequence
(BLAST)

001: MAVVGVLALQ GSYNEHMAAL RRIGVKGVEV RKPEQLLGID SLIIPGGEST TMAKLANYHN LFPALREFVG GGKPVWGTCA GLIFLANKAV VLLSGQKTGG
101: QELVGGLDCT VHRNFFGSQL QSFETELSVP KLSEKEGGND TCRGVFIRAP AILEVGPDVE ILADCPVPVD RPSITISFGE GTEEEEYSKD RVIVAVRQGN
201: ILATAFHPEL TSDSRWHRFF LDMDKESPAK AFSALSLSSS SRDTEGLPKN KPFDLPIFE

Best Arabidopsis Sequence Match ( AT5G60540.1 )
(BLAST)

001: MTVGVLALQG SFNEHIAALR RLGVQGVEIR KADQLLTVSS LIIPGGESTT MAKLAEYHNL FPALREFVKM GKPVWGTCAG LIFLADRAVG QKEGGQELVG
101: GLDCTVHRNF FGSQIQSFEA DILVPQLTSQ EGGPETYRGV FIRAPAVLDV GPDVEVLADY PVPSNKVLYS SSTVQIQEED ALPETKVIVA VKQGNLLATA
201: FHPELTADTR WHSYFIKMTK EIEQGASSSS SKTIVSVGET SAGPEPAKPD LPIFQ

Arabidopsis Description

PDX2PDX2 [Source:UniProtKB/TrEMBL;Acc:A0A178UA48]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.