Factsheet for Bra002473.1-P

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

plastid 2
cytosol 4
mitochondrion 2

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
Bra005687.1-P
Bra028901.1-P

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G60540.1	Bra005687.1-P	AT5G01410.1	16766694
AT5G60540.1	Bra028901.1-P	AT5G01410.1	16766694

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY31539	Canola	cytosol	100.0	100.0
CDX80159	Canola	cytosol	78.57	96.59
AT5G60540.1	Thale cress	cytosol	93.25	92.16
VIT_06s0004g03000.t01	Wine grape	cytosol	75.79	75.79
KRH65766	Soybean	cytosol	72.62	72.05
KRH75883	Soybean	cytosol	72.22	70.54
Solyc11g069290.1.1	Tomato	plastid	67.46	67.73
PGSC0003DMT400020828	Potato	cytosol	67.46	67.73
GSMUA_Achr7P07370_001	Banana	cytosol	65.08	64.82
KXG29380	Sorghum	cytosol	65.08	64.31
Os02t0130100-01	Rice	cytosol	63.89	63.14
Zm00001d053981_P002	Maize	cytosol	64.68	62.93
KRH75832	Soybean	cytosol	24.21	62.89
TraesCS6B01G117600.1	Wheat	cytosol	63.49	62.5
TraesCSU01G113600.1	Wheat	cytosol, mitochondrion	63.49	62.5
HORVU6Hr1G015450.1	Barley	cytosol, mitochondrion	63.1	62.11
TraesCS6A01G084600.1	Wheat	cytosol	63.1	62.11
TraesCS4D01G289800.1	Wheat	plastid	63.1	55.99
TraesCS4B01G291200.1	Wheat	cytosol	62.7	50.8
HORVU4Hr1G075840.3	Barley	mitochondrion	63.1	44.92
TraesCS4A01G013200.2	Wheat	cytosol	45.63	40.93

Protein Annotations

KEGG:00220+3.5.1.2	KEGG:00250+3.5.1.2	KEGG:00471+3.5.1.2	KEGG:00750+4.3.3.6	Gene3D:3.40.50.880	MapMan:7.7.1.2
EnsemblPlantsGene:Bra002473	EnsemblPlants:Bra002473.1	EnsemblPlants:Bra002473.1-P	InterPro:Class_I_gatase-like	GO:GO:0003674	GO:GO:0003824
GO:GO:0004359	GO:GO:0005488	GO:GO:0005515	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623
GO:GO:0005737	GO:GO:0005829	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987
GO:GO:0016787	GO:GO:0042819	GO:GO:0042823	GO:GO:0046982	InterPro:IPR002161	InterPro:IPR029062
UniProt:M4CE42	HAMAP:MF_01615	PFAM:PF01174	PIRSF:PIRSF005639	ScanProsite:PS01236	PFscan:PS51130
PANTHER:PTHR31559	InterPro:PdxT/SNO	InterPro:PdxT/SNO_CS	SUPFAM:SSF52317	TIGRFAMs:TIGR03800	UniParc:UPI00025440DC
SEG:seg	:	:	:	:	:

Description

AT5G60540 (E=3e-122) EMB2407, ATPDX2, PDX2 | PDX2 (PYRIDOXINE BIOSYNTHESIS 2); glutaminase/ glutaminyl-tRNA synthase (glutamine-hydrolyzing)/ protein heterodimerization

Coordinates

chrA10:-:9321846..9323406

Molecular Weight (calculated)

27244.6 Da

IEP (calculated)

5.339

GRAVY (calculated)

-0.016

Length

252 amino acids

Sequence
(BLAST)

001: MTVGVLALQG SFNEHIAALR RLGVQGIEIR KAEQLLTVSS LIIPGGESTT MAKLAEYHNL FPALREFVKT GKPVWGTCAG LIFLADRAVG QKEGGQELVG
101: GLDCTVHRNF FGSQIQSFEA DISVPILTSK EGGPETFRGV FIRAPAVLDV GPDVEVLAHY PVPSNKVLYS SSTVQIQEED ALPETNVIVA VKQRNLLATA
201: FHPELTADTR WHSYFMKMAK EMEQGASSSS SGTIVSVGET SEQAKPDIPI YQ

Best Arabidopsis Sequence Match ( AT5G60540.1 )
(BLAST)

001: MTVGVLALQG SFNEHIAALR RLGVQGVEIR KADQLLTVSS LIIPGGESTT MAKLAEYHNL FPALREFVKM GKPVWGTCAG LIFLADRAVG QKEGGQELVG
101: GLDCTVHRNF FGSQIQSFEA DILVPQLTSQ EGGPETYRGV FIRAPAVLDV GPDVEVLADY PVPSNKVLYS SSTVQIQEED ALPETKVIVA VKQGNLLATA
201: FHPELTADTR WHSYFIKMTK EIEQGASSSS SKTIVSVGET SAGPEPAKPD LPIFQ

Arabidopsis Description

PDX2PDX2 [Source:UniProtKB/TrEMBL;Acc:A0A178UA48]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.