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Barley
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Barley
Subcellular Localization
min:
: max

 
Winner_takes_all: mitochondrion, cytosol

Predictor Summary:
  • nucleus 1
  • cytosol 4
  • mitochondrion 3
Predictors GFP MS/MS Papers
Winner Takes All:cytosol, mitochondrion
Any Predictor:cytosol, mitochondrion, nucleus
BaCelLo:nucleus
EpiLoc:cytosol
MultiLoc:mitochondrion
Plant-mPloc:cytosol
PProwler:mitochondrion
TargetP:mitochondrion
WoLF PSORT:cytosol
YLoc:cytosol
PPI

Inferred distinct locusB in Crop

locusBlocations
HORVU2Hr1G065120.1
HORVU4Hr1G027040.2

Inferred from Arabidopsis experimental PPI

Ath locusAlocusBAth locusBPaper
AT5G60540.1 HORVU2Hr1G065120.1 AT2G38230.1 16766694
AT5G60540.1 HORVU4Hr1G027040.2 AT2G38230.1 16766694
AT5G60540.1 HORVU2Hr1G065120.1 AT5G01410.1 16766694
AT5G60540.1 HORVU4Hr1G027040.2 AT5G01410.1 16766694
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
TraesCSU01G113600.1 Wheat cytosol, mitochondrion 96.09 96.09
TraesCS6A01G084600.1 Wheat cytosol 96.09 96.09
TraesCS6B01G117600.1 Wheat cytosol 95.31 95.31
KXG29380 Sorghum cytosol 87.5 87.84
Os02t0130100-01 Rice cytosol 85.94 86.27
Zm00001d053981_P002 Maize cytosol 86.33 85.33
GSMUA_Achr7P07370_001 Banana cytosol 69.14 69.96
VIT_06s0004g03000.t01 Wine grape cytosol 67.19 68.25
KRH65766 Soybean cytosol 65.62 66.14
KRH75883 Soybean cytosol 66.41 65.89
PGSC0003DMT400020828 Potato cytosol 63.67 64.94
Solyc11g069290.1.1 Tomato plastid 62.89 64.14
AT5G60540.1 Thale cress cytosol 63.28 63.53
CDY31539 Canola cytosol 62.11 63.1
Bra002473.1-P Field mustard cytosol 62.11 63.1
HORVU4Hr1G075840.3 Barley mitochondrion 85.94 62.15
CDY09196 Canola cytosol 55.08 61.04
CDX80159 Canola cytosol 48.05 60.0
KRH75832 Soybean cytosol 22.27 58.76
Protein Annotations
KEGG:00220+3.5.1.2KEGG:00250+3.5.1.2KEGG:00471+3.5.1.2KEGG:00750+4.3.3.6Gene3D:3.40.50.880MapMan:7.7.1.2
EMBL:AK354920InterPro:Class_I_gatase-likeUniProt:F2CTG8GO:GO:0003674GO:GO:0003824GO:GO:0004359
GO:GO:0008150GO:GO:0008152GO:GO:0009058GO:GO:0009987GO:GO:0016787GO:GO:0042819
GO:GO:0042823EnsemblPlantsGene:HORVU6Hr1G015450EnsemblPlants:HORVU6Hr1G015450.1InterPro:IPR002161InterPro:IPR029062HAMAP:MF_01615
PFAM:PF01174PIRSF:PIRSF005639ScanProsite:PS01236PFscan:PS51130PANTHER:PTHR31559InterPro:PdxT/SNO
InterPro:PdxT/SNO_CSSUPFAM:SSF52317TIGRFAMs:TIGR03800UniParc:UPI0002004EFESEG:seg:
Description
Predicted protein [Source:UniProtKB/TrEMBL;Acc:F2CTG8]
Coordinates
chrchr6H:-:34026543..34029172
Molecular Weight (calculated)
27196.6 Da
IEP (calculated)
5.132
GRAVY (calculated)
0.004
Length
256 amino acids
Sequence
(BLAST)
001: MAAVVGVLAL QGSYNEHMAA LRRIGAKGVE VRKPEQLLAV DSLIIPGGES TTMAKLANYD NLFPALREFV GTGKPVWGTC AGLIFLANKA VGQKTGGQEL
101: VGGLDCTVHR NFFGSQLQSF ETELSVPMLA EKEGGSNTCR GVFIRAPAIL EVGQDVEVLA DCPVPAGRPS ITITSGEGVE DQVYSKDRVI VAVRQGNILA
201: TAFHPELTSD SRWHQLFLDM DKESQAKALA ALSLSASSNN AEVGSKNKAP DLPIFE
Best Arabidopsis Sequence Match ( AT5G60540.1 )
(BLAST)
001: MTVGVLALQG SFNEHIAALR RLGVQGVEIR KADQLLTVSS LIIPGGESTT MAKLAEYHNL FPALREFVKM GKPVWGTCAG LIFLADRAVG QKEGGQELVG
101: GLDCTVHRNF FGSQIQSFEA DILVPQLTSQ EGGPETYRGV FIRAPAVLDV GPDVEVLADY PVPSNKVLYS SSTVQIQEED ALPETKVIVA VKQGNLLATA
201: FHPELTADTR WHSYFIKMTK EIEQGASSSS SKTIVSVGET SAGPEPAKPD LPIFQ
Arabidopsis Description
PDX2PDX2 [Source:UniProtKB/TrEMBL;Acc:A0A178UA48]
SUBAcon: [cytosol]
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.