Factsheet for PGSC0003DMT400020828

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

cytosol 5
extracellular 1
endoplasmic reticulum 1
vacuole 1
plasma membrane 1
golgi 1
plastid 1
cytoskeleton 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytoskeleton, cytosol, plastid, secretory
BaCelLo:	cytosol
EpiLoc:	cytosol
MultiLoc:	cytosol
Plant-mPloc:	cytosol
Predotar:	plastid
PProwler:	secretory
WoLF PSORT:	cytoskeleton
YLoc:	cytosol

PPI

Inferred distinct locusB in Crop

locusB	locations
PGSC0003DMT400078045

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G60540.1	PGSC0003DMT400078045	AT2G38230.1	16766694
AT5G60540.1	PGSC0003DMT400078045	AT5G01410.1	16766694

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc11g069290.1.1	Tomato	plastid	96.81	96.81
VIT_06s0004g03000.t01	Wine grape	cytosol	71.71	71.43
AT5G60540.1	Thale cress	cytosol	69.32	68.24
KRH65766	Soybean	cytosol	68.53	67.72
Bra002473.1-P	Field mustard	cytosol	67.73	67.46
CDY31539	Canola	cytosol	67.73	67.46
KRH75883	Soybean	cytosol	68.92	67.05
HORVU6Hr1G015450.1	Barley	cytosol, mitochondrion	64.94	63.67
GSMUA_Achr7P07370_001	Banana	cytosol	64.14	63.64
KXG29380	Sorghum	cytosol	64.14	63.14
TraesCS6A01G084600.1	Wheat	cytosol	64.14	62.89
CDY09196	Canola	cytosol	57.77	62.77
TraesCS6B01G117600.1	Wheat	cytosol	63.74	62.5
TraesCSU01G113600.1	Wheat	cytosol, mitochondrion	63.74	62.5
CDX80159	Canola	cytosol	51.0	62.44
Os02t0130100-01	Rice	cytosol	63.35	62.35
Zm00001d053981_P002	Maize	cytosol	63.74	61.78
KRH75832	Soybean	cytosol	21.51	55.67
TraesCS4D01G289800.1	Wheat	plastid	62.15	54.93
TraesCS4B01G291200.1	Wheat	cytosol	62.55	50.48
HORVU4Hr1G075840.3	Barley	mitochondrion	62.55	44.35
TraesCS4A01G013200.2	Wheat	cytosol	44.62	39.86

Protein Annotations

KEGG:00220+3.5.1.2	KEGG:00250+3.5.1.2	KEGG:00471+3.5.1.2	KEGG:00750+4.3.3.6	EntrezGene:102605133	Gene3D:3.40.50.880
MapMan:7.7.1.2	InterPro:Class_I_gatase-like	GO:GO:0003674	GO:GO:0003824	GO:GO:0004359	GO:GO:0005488
GO:GO:0005515	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0005829
GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	GO:GO:0016787	GO:GO:0042819
GO:GO:0042823	GO:GO:0046982	InterPro:IPR002161	InterPro:IPR029062	UniProt:M1AE51	HAMAP:MF_01615
PFAM:PF01174	EnsemblPlantsGene:PGSC0003DMG400008060	PGSC:PGSC0003DMG400008060	EnsemblPlants:PGSC0003DMT400020828	PIRSF:PIRSF005639	ScanProsite:PS01236
PFscan:PS51130	PANTHER:PTHR31559	InterPro:PdxT/SNO	InterPro:PdxT/SNO_CS	SUPFAM:SSF52317	TIGRFAMs:TIGR03800
UniParc:UPI0002957647	RefSeq:XP_006340154.1	:	:	:	:

Description

Pyridoxine biosynthesis protein [Source:PGSC_GENE;Acc:PGSC0003DMG400008060]

Coordinates

chr11:-:41209522..41215524

Molecular Weight (calculated)

27050.6 Da

IEP (calculated)

5.342

GRAVY (calculated)

0.075

Length

251 amino acids

Sequence
(BLAST)

001: MVVGVLALQG SFNEHIAVLK RLGVKGVEVR KPEQLLNVSS LIIPGGESTT MAKLAELHNL FPALREFVQM GKPVWGTCAG LIFLANRATG QKTGGQKLIG
101: GLDCTVHRNF FGSQIQSFET ELPIPQVVAE EGGPPSFRAV FIRAPAILDV GPDVEVLADI PLSAIETINS NPAIPKEEDS TESGKKVIVA VKQGNLLATA
201: FHPELTADTR WHSYFLKMVP EIEEGTSDIV STSTSNQSFG ARSIIDFPIY Q

Best Arabidopsis Sequence Match ( AT5G60540.1 )
(BLAST)

001: MTVGVLALQG SFNEHIAALR RLGVQGVEIR KADQLLTVSS LIIPGGESTT MAKLAEYHNL FPALREFVKM GKPVWGTCAG LIFLADRAVG QKEGGQELVG
101: GLDCTVHRNF FGSQIQSFEA DILVPQLTSQ EGGPETYRGV FIRAPAVLDV GPDVEVLADY PVPSNKVLYS SSTVQIQEED ALPETKVIVA VKQGNLLATA
201: FHPELTADTR WHSYFIKMTK EIEQGASSSS SKTIVSVGET SAGPEPAKPD LPIFQ

Arabidopsis Description

PDX2PDX2 [Source:UniProtKB/TrEMBL;Acc:A0A178UA48]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.