Factsheet for HORVU4Hr1G075840.3

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

plastid 1
mitochondrion 3

Predictors

GFP

MS/MS

Papers

Winner Takes All:	mitochondrion
Any Predictor:	mitochondrion, plastid
ChloroP:	plastid
iPSORT:	mitochondrion
MultiLoc:	mitochondrion
TargetP:	mitochondrion

PPI

Inferred distinct locusB in Crop

locusB	locations
HORVU2Hr1G065120.1
HORVU4Hr1G027040.2

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G60540.1	HORVU2Hr1G065120.1	AT2G38230.1	16766694
AT5G60540.1	HORVU4Hr1G027040.2	AT2G38230.1	16766694
AT5G60540.1	HORVU2Hr1G065120.1	AT5G01410.1	16766694
AT5G60540.1	HORVU4Hr1G027040.2	AT5G01410.1	16766694

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Os02t0130100-01	Rice	cytosol	64.12	89.02
KXG29380	Sorghum	cytosol	63.56	88.24
Zm00001d053981_P002	Maize	cytosol	64.41	88.03
HORVU6Hr1G015450.1	Barley	cytosol, mitochondrion	62.15	85.94
TraesCS4D01G289800.1	Wheat	plastid	68.64	85.56
TraesCS4B01G291200.1	Wheat	cytosol	68.64	78.14
GSMUA_Achr7P07370_001	Banana	cytosol	52.26	73.12
VIT_06s0004g03000.t01	Wine grape	cytosol	48.59	68.25
KRH65766	Soybean	cytosol	48.02	66.93
KRH75883	Soybean	cytosol	48.59	66.67
TraesCS4A01G013200.2	Wheat	cytosol	52.82	66.55
AT5G60540.1	Thale cress	cytosol	45.48	63.14
CDY31539	Canola	cytosol	44.92	63.1
Bra002473.1-P	Field mustard	cytosol	44.92	63.1
PGSC0003DMT400020828	Potato	cytosol	44.35	62.55
Solyc11g069290.1.1	Tomato	plastid	44.35	62.55
CDY09196	Canola	cytosol	39.83	61.04
CDX80159	Canola	cytosol	34.75	60.0
KRH75832	Soybean	cytosol	15.82	57.73

Protein Annotations

KEGG:00220+3.5.1.2	KEGG:00250+3.5.1.2	KEGG:00471+3.5.1.2	KEGG:00750+4.3.3.6	Gene3D:3.40.50.880	MapMan:7.7.1.2
UniProt:A0A287PQ57	InterPro:Class_I_gatase-like	GO:GO:0003674	GO:GO:0003824	GO:GO:0004359	GO:GO:0008150
GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	GO:GO:0016787	GO:GO:0042819	GO:GO:0042823
EnsemblPlantsGene:HORVU4Hr1G075840	EnsemblPlants:HORVU4Hr1G075840.3	InterPro:IPR002161	InterPro:IPR029062	HAMAP:MF_01615	PFAM:PF01174
ScanProsite:PS01236	PFscan:PS51130	PANTHER:PTHR31559	InterPro:PdxT/SNO	InterPro:PdxT/SNO_CS	SUPFAM:SSF52317
TIGRFAMs:TIGR03800	UniParc:UPI000B468672	SEG:seg	:	:	:

Description

No Description!

Coordinates

chrchr4H:-:599381358..599384560

Molecular Weight (calculated)

37671.3 Da

IEP (calculated)

8.675

GRAVY (calculated)

-0.093

Length

354 amino acids

Sequence
(BLAST)

001: GRPRLSHRRA RTALPRLAAR IEQPPLPFSP PLSLSLSLSL GGATSPSAAA CGRRPAAATA TYAFSPPXPP PQQPLPSSIP GTTYLYLTPR PLLSQGQGAM
101: AVVGVLALQG SYNEHMSALR RIGVKGVEVR KPEQLQGIDS LIIPGGESTT MAKLANYHNL FPALREFVGA GKPVWGTCAG LIFLANKAVG QKSGGQELVG
201: GLDCTVHRNF FGSQLQSFET ELSVPMLAEK EGGSNTCRGV FIRAPAILEV GSDVEILADC PVPSGKPSIT IPSSVGVEEE VYSKDRVIVA VRQGNILATA
301: FHPELTSDCR WHRFFLDMDK ESHPKAFCAL SLSSSSRDSE GRSMTKPFDL PIFE

Best Arabidopsis Sequence Match ( AT5G60540.1 )
(BLAST)

001: MTVGVLALQG SFNEHIAALR RLGVQGVEIR KADQLLTVSS LIIPGGESTT MAKLAEYHNL FPALREFVKM GKPVWGTCAG LIFLADRAVG QKEGGQELVG
101: GLDCTVHRNF FGSQIQSFEA DILVPQLTSQ EGGPETYRGV FIRAPAVLDV GPDVEVLADY PVPSNKVLYS SSTVQIQEED ALPETKVIVA VKQGNLLATA
201: FHPELTADTR WHSYFIKMTK EIEQGASSSS SKTIVSVGET SAGPEPAKPD LPIFQ

Arabidopsis Description

PDX2PDX2 [Source:UniProtKB/TrEMBL;Acc:A0A178UA48]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.