Factsheet for TraesCS4D01G289800.1

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 7
cytosol 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plastid
Any Predictor:	cytosol, plastid
ChloroP:	plastid
iPSORT:	plastid
MultiLoc:	plastid
Predotar:	plastid
PProwler:	plastid
TargetP:	plastid
WoLF PSORT:	plastid
YLoc:	cytosol

PPI

Inferred distinct locusB in Crop

locusB	locations
TraesCS2A01G268800.1
TraesCS2B01G287600.1
TraesCS2D01G267800.1
TraesCS4A01G178700.1
TraesCS4B01G138900.1
TraesCS4D01G133600.1

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G60540.1	TraesCS2A01G268800.1	AT2G38230.1	16766694
AT5G60540.1	TraesCS2B01G287600.1	AT2G38230.1	16766694
AT5G60540.1	TraesCS2D01G267800.1	AT2G38230.1	16766694
AT5G60540.1	TraesCS4A01G178700.1	AT2G38230.1	16766694
AT5G60540.1	TraesCS4B01G138900.1	AT2G38230.1	16766694
AT5G60540.1	TraesCS4D01G133600.1	AT2G38230.1	16766694
AT5G60540.1	TraesCS2A01G268800.1	AT5G01410.1	16766694
AT5G60540.1	TraesCS2B01G287600.1	AT5G01410.1	16766694
AT5G60540.1	TraesCS2D01G267800.1	AT5G01410.1	16766694
AT5G60540.1	TraesCS4A01G178700.1	AT5G01410.1	16766694
AT5G60540.1	TraesCS4B01G138900.1	AT5G01410.1	16766694
AT5G60540.1	TraesCS4D01G133600.1	AT5G01410.1	16766694

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Os02t0130100-01	Rice	cytosol	80.63	89.8
KXG29380	Sorghum	cytosol	79.23	88.24
Zm00001d053981_P002	Maize	cytosol	79.93	87.64
TraesCS4B01G291200.1	Wheat	cytosol	87.68	80.06
TraesCS4A01G013200.2	Wheat	cytosol	71.13	71.89
GSMUA_Achr7P07370_001	Banana	cytosol	63.03	70.75
HORVU4Hr1G075840.3	Barley	mitochondrion	85.56	68.64
VIT_06s0004g03000.t01	Wine grape	cytosol	60.21	67.86
KRH65766	Soybean	cytosol	60.21	67.32
KRH75883	Soybean	cytosol	60.92	67.05
AT5G60540.1	Thale cress	cytosol	56.69	63.14
CDY31539	Canola	cytosol	55.99	63.1
Bra002473.1-P	Field mustard	cytosol	55.99	63.1
PGSC0003DMT400020828	Potato	cytosol	54.93	62.15
Solyc11g069290.1.1	Tomato	plastid	54.93	62.15
CDY09196	Canola	cytosol	50.35	61.9
CDX80159	Canola	cytosol	43.66	60.49
KRH75832	Soybean	cytosol	19.37	56.7

Protein Annotations

KEGG:00220+3.5.1.2	KEGG:00250+3.5.1.2	KEGG:00471+3.5.1.2	KEGG:00750+4.3.3.6	Gene3D:3.40.50.880	MapMan:7.7.1.2
InterPro:Class_I_gatase-like	GO:GO:0003674	GO:GO:0003824	GO:GO:0004359	GO:GO:0005488	GO:GO:0005515
GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0005829	GO:GO:0008150
GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	GO:GO:0016787	GO:GO:0042819	GO:GO:0042823
GO:GO:0046982	InterPro:IPR002161	InterPro:IPR029062	HAMAP:MF_01615	PFAM:PF01174	ScanProsite:PS01236
PFscan:PS51130	PANTHER:PTHR31559	InterPro:PdxT/SNO	InterPro:PdxT/SNO_CS	SUPFAM:SSF52317	TIGRFAMs:TIGR03800
EnsemblPlantsGene:TraesCS4D01G289800	EnsemblPlants:TraesCS4D01G289800.1	TIGR:cd01749	SEG:seg	:	:

Description

No Description!

Coordinates

chr4D:+:460949028..460951792

Molecular Weight (calculated)

30466.6 Da

IEP (calculated)

6.777

GRAVY (calculated)

0.040

Length

284 amino acids

Sequence
(BLAST)

001: MAVVGVLALQ GSYNEHMSGT PNLLLFSRFS RVSATCSLVI PSGSVWAALR RIGVKGVEVR KPEQLQGLDS LIIPGGESTT MAKLANYHNL FPALREFVGA
101: GKPVWGTCAG LIFLANKAVG QKLGGQELVG GLDCTVHRNF FGSQLQSFET ELSVPMLADK EGGSNTCRGV FIRAPAILEV GSDVEILAEC PVPSGRPSIT
201: IPSAEGVEEE VYTKDRVIVA VRQGNILATA FHPELTSDCR WHRFFLDMDK ESHPKAFSAL SLSSSSRDSA GGSKTKPFDL PIFE

Best Arabidopsis Sequence Match ( AT5G60540.1 )
(BLAST)

001: MTVGVLALQG SFNEHIAALR RLGVQGVEIR KADQLLTVSS LIIPGGESTT MAKLAEYHNL FPALREFVKM GKPVWGTCAG LIFLADRAVG QKEGGQELVG
101: GLDCTVHRNF FGSQIQSFEA DILVPQLTSQ EGGPETYRGV FIRAPAVLDV GPDVEVLADY PVPSNKVLYS SSTVQIQEED ALPETKVIVA VKQGNLLATA
201: FHPELTADTR WHSYFIKMTK EIEQGASSSS SKTIVSVGET SAGPEPAKPD LPIFQ

Arabidopsis Description

PDX2PDX2 [Source:UniProtKB/TrEMBL;Acc:A0A178UA48]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.