Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- mitochondrion 2
- peroxisome 1
- cytosol 2
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS4D01G133600.1 | Wheat | cytosol | 99.36 | 99.36 |
| HORVU4Hr1G027040.2 | Barley | cytosol, peroxisome | 98.09 | 97.47 |
| TraesCS4A01G178700.1 | Wheat | cytosol | 97.45 | 97.45 |
| Zm00001d018633_P001 | Maize | cytosol | 89.81 | 88.96 |
| OQU88300 | Sorghum | cytosol | 89.17 | 88.33 |
| Zm00001d007936_P001 | Maize | cytosol | 88.85 | 88.01 |
| TraesCS2B01G287600.1 | Wheat | cytosol | 86.62 | 86.08 |
| GSMUA_Achr1P25530_001 | Banana | cytosol | 70.06 | 85.94 |
| GSMUA_Achr8P31880_001 | Banana | cytosol | 75.8 | 85.92 |
| Bra028901.1-P | Field mustard | cytosol | 84.39 | 85.76 |
| CDY04839 | Canola | cytosol | 84.39 | 85.76 |
| GSMUA_AchrUn_... | Banana | cytosol | 69.75 | 85.55 |
| Bra005687.1-P | Field mustard | cytosol | 84.08 | 85.44 |
| CDX80774 | Canola | cytosol | 84.08 | 85.44 |
| CDY11202 | Canola | cytosol | 84.08 | 85.44 |
| AT5G01410.1 | Thale cress | cytosol | 83.76 | 85.11 |
| KRH11075 | Soybean | endoplasmic reticulum, nucleus | 84.08 | 84.89 |
| KRH21198 | Soybean | endoplasmic reticulum | 83.76 | 84.57 |
| PGSC0003DMT400078045 | Potato | cytosol | 83.12 | 84.47 |
| Solyc06g081980.1.1 | Tomato | extracellular, nucleus, plastid, unclear | 82.8 | 84.14 |
| CDX93320 | Canola | cytosol | 76.75 | 83.39 |
| AT2G38230.1 | Thale cress | cytosol | 81.85 | 83.17 |
| CDY18400 | Canola | cytosol | 66.88 | 79.55 |
| VIT_06s0004g06640.t01 | Wine grape | cytosol | 83.12 | 77.45 |
| AT2G38210.1 | Thale cress | cytosol, peroxisome, plastid | 19.43 | 77.22 |
| Os11t0708500-01 | Rice | plasma membrane | 86.94 | 75.21 |
| GSMUA_AchrUn_... | Banana | cytosol | 68.79 | 73.22 |
| Zm00001d018632_P001 | Maize | extracellular | 89.17 | 67.8 |
| GSMUA_Achr1P27650_001 | Banana | cytosol | 13.06 | 49.4 |
Protein Annotations
| KEGG:00750+4.3.3.6 | Gene3D:3.20.20.70 | MapMan:7.7.1.1 | InterPro:Aldolase_TIM | GO:GO:0003674 | GO:GO:0003824 |
| GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009058 | GO:GO:0009987 | GO:GO:0042819 | GO:GO:0042823 |
| InterPro:IPR001852 | InterPro:IPR013785 | HAMAP:MF_01824 | PFAM:PF01680 | PIRSF:PIRSF029271 | ScanProsite:PS01235 |
| PFscan:PS51129 | PANTHER:PTHR31829 | InterPro:PdxS/SNZ | InterPro:PdxS/SNZ_N | InterPro:RibuloseP-bd_barrel | SUPFAM:SSF51366 |
| TIGRFAMs:TIGR00343 | EnsemblPlantsGene:TraesCS4B01G138900 | EnsemblPlants:TraesCS4B01G138900.1 | TIGR:cd04727 | SEG:seg | : |
Description
No Description!
Coordinates
chr4B:-:183002095..183003039
Molecular Weight (calculated)
33191.3 Da
IEP (calculated)
6.790
GRAVY (calculated)
0.148
Length
314 amino acids
Sequence
(BLAST)
(BLAST)
001: MASDGVVALY GNNKAVVEPS AKPAAATFSV KVGLAQMLRG GVIMDVVTAE QARLAEEAGA CAVMALERVP ADIRAQGGVA RMSDPALIRD IKRAVTIPVM
101: AKARIGHFVE AQILEAIGVD YVDESEVLTL ADEAHHINKH NFRVPFVCGC RDLGEALRRI REGAAMIRTK GEAGTGNVVE AVRHVRSVMG AVRALRNMDE
201: DEVFSYAKQI AAPYDLVMQT KQLGRLPVVQ FAAGGVATPA DAALMMQLGC DGVFVGSGIF KSGDPARRAR AIVQAVTHYS DPEILANVSA GLGEAMVGIN
301: LSDPGVERFA ARSQ
101: AKARIGHFVE AQILEAIGVD YVDESEVLTL ADEAHHINKH NFRVPFVCGC RDLGEALRRI REGAAMIRTK GEAGTGNVVE AVRHVRSVMG AVRALRNMDE
201: DEVFSYAKQI AAPYDLVMQT KQLGRLPVVQ FAAGGVATPA DAALMMQLGC DGVFVGSGIF KSGDPARRAR AIVQAVTHYS DPEILANVSA GLGEAMVGIN
301: LSDPGVERFA ARSQ
001: MEGTGVVAVY GNGAITEAKK SPFSVKVGLA QMLRGGVIMD VVNAEQARIA EEAGACAVMA LERVPADIRA QGGVARMSDP QMIKEIKQAV TIPVMAKARI
101: GHFVEAQILE AIGIDYIDES EVLTLADEDH HINKHNFRIP FVCGCRNLGE ALRRIREGAA MIRTKGEAGT GNIIEAVRHV RSVNGDIRVL RNMDDDEVFT
201: FAKKLAAPYD LVMQTKQLGR LPVVQFAAGG VATPADAALM MQLGCDGVFV GSGIFKSGDP ARRARAIVQA VTHYSDPEML VEVSCGLGEA MVGINLNDEK
301: VERFANRSE
101: GHFVEAQILE AIGIDYIDES EVLTLADEDH HINKHNFRIP FVCGCRNLGE ALRRIREGAA MIRTKGEAGT GNIIEAVRHV RSVNGDIRVL RNMDDDEVFT
201: FAKKLAAPYD LVMQTKQLGR LPVVQFAAGG VATPADAALM MQLGCDGVFV GSGIFKSGDP ARRARAIVQA VTHYSDPEML VEVSCGLGEA MVGINLNDEK
301: VERFANRSE
Arabidopsis Description
PDX13RSR4 [Source:UniProtKB/TrEMBL;Acc:A0A178UIV6]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.