Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 1
- peroxisome 1
- mitochondrion 1
- cytosol 2
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| AT2G38210.1 | Thale cress | cytosol, peroxisome, plastid | 24.92 | 97.47 |
| CDX93320 | Canola | cytosol | 87.38 | 93.43 |
| CDY18400 | Canola | cytosol | 76.38 | 89.39 |
| AT5G01410.1 | Thale cress | cytosol | 88.67 | 88.67 |
| KRH21198 | Soybean | endoplasmic reticulum | 88.03 | 87.46 |
| PGSC0003DMT400078045 | Potato | cytosol | 87.38 | 87.38 |
| Solyc06g081980.1.1 | Tomato | extracellular, nucleus, plastid, unclear | 87.06 | 87.06 |
| KRH11075 | Soybean | endoplasmic reticulum, nucleus | 87.38 | 86.82 |
| GSMUA_AchrUn_... | Banana | cytosol | 70.23 | 84.77 |
| TraesCS2B01G287600.1 | Wheat | cytosol | 86.41 | 84.49 |
| TraesCS2D01G267800.1 | Wheat | cytosol | 86.08 | 84.18 |
| GSMUA_Achr8P31880_001 | Banana | cytosol | 75.4 | 84.12 |
| GSMUA_Achr1P25530_001 | Banana | cytosol | 69.58 | 83.98 |
| HORVU2Hr1G065120.1 | Barley | cytosol | 85.76 | 83.86 |
| TraesCS4B01G138900.1 | Wheat | cytosol | 83.17 | 81.85 |
| Os07t0100200-01 | Rice | plasma membrane | 84.14 | 81.76 |
| HORVU4Hr1G027040.2 | Barley | cytosol, peroxisome | 83.5 | 81.65 |
| TraesCS4D01G133600.1 | Wheat | cytosol | 82.85 | 81.53 |
| Os10t0100700-01 | Rice | plasma membrane | 82.52 | 81.47 |
| TraesCS4A01G178700.1 | Wheat | cytosol | 82.52 | 81.21 |
| VIT_06s0004g06640.t01 | Wine grape | cytosol | 88.35 | 81.01 |
| Zm00001d007936_P001 | Maize | cytosol | 82.52 | 80.44 |
| Zm00001d018633_P001 | Maize | cytosol | 82.2 | 80.13 |
| OQU88300 | Sorghum | cytosol | 81.88 | 79.81 |
| GSMUA_AchrUn_... | Banana | cytosol | 68.93 | 72.2 |
| TraesCS2A01G268800.1 | Wheat | plastid | 86.08 | 68.91 |
| Os11t0708500-01 | Rice | plasma membrane | 78.32 | 66.67 |
| Zm00001d018632_P001 | Maize | extracellular | 82.52 | 61.74 |
| AT3G16050.1 | Thale cress | cytosol | 58.9 | 57.96 |
| GSMUA_Achr1P27650_001 | Banana | cytosol | 13.27 | 49.4 |
| Os10t0191600-00 | Rice | plasma membrane | 28.48 | 47.57 |
Protein Annotations
| KEGG:00750+4.3.3.6 | Gene3D:3.20.20.70 | PDB:5LNT | MapMan:7.7.1.1 | EntrezGene:818402 | UniProt:A0A178VZ00 |
| ProteinID:AAC27172.1 | ProteinID:AEC09511.1 | EMBL:AF370296 | EMBL:AF385694 | ArrayExpress:AT2G38230 | EnsemblPlantsGene:AT2G38230 |
| RefSeq:AT2G38230 | TAIR:AT2G38230 | RefSeq:AT2G38230-TAIR-G | EnsemblPlants:AT2G38230.1 | TAIR:AT2G38230.1 | Symbol:ATPDX1.1 |
| EMBL:AY063043 | InterPro:Aldolase_TIM | GO:GO:0003674 | GO:GO:0003824 | GO:GO:0005488 | GO:GO:0005515 |
| GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005737 | GO:GO:0005829 | GO:GO:0008150 |
| GO:GO:0008152 | GO:GO:0009058 | GO:GO:0009507 | GO:GO:0009536 | GO:GO:0009987 | GO:GO:0016829 |
| GO:GO:0036381 | GO:GO:0042819 | GO:GO:0042823 | GO:GO:0046982 | InterPro:IPR001852 | InterPro:IPR013785 |
| HAMAP:MF_01824 | RefSeq:NP_181358.1 | UniProt:O80448 | ProteinID:OAP11188.1 | PFAM:PF01680 | PIRSF:PIRSF029271 |
| PO:PO:0000013 | PO:PO:0000014 | PO:PO:0000026 | PO:PO:0000027 | PO:PO:0000293 | PO:PO:0009001 |
| PO:PO:0009005 | PO:PO:0009006 | PO:PO:0009025 | PO:PO:0009046 | PO:PO:0009047 | PO:PO:0009062 |
| PO:PO:0009089 | PO:PO:0020030 | ScanProsite:PS01235 | PFscan:PS51129 | PANTHER:PTHR31829 | InterPro:PdxS/SNZ |
| InterPro:PdxS/SNZ_N | InterPro:RibuloseP-bd_barrel | SUPFAM:SSF51366 | TIGRFAMs:TIGR00343 | UniParc:UPI000009EB81 | SEG:seg |
Description
PDX11Pyridoxal 5'-phosphate synthase subunit PDX1.1 [Source:UniProtKB/Swiss-Prot;Acc:O80448]
Coordinates
chr2:+:16011233..16012515
Molecular Weight (calculated)
32863.9 Da
IEP (calculated)
5.797
GRAVY (calculated)
0.086
Length
309 amino acids
Sequence
(BLAST)
(BLAST)
001: MAGTGVVAVY GEGAMTETKQ KSPFSVKVGL AQMLRGGVIM DVVNAEQARI AEEAGACAVM ALERVPADIR AQGGVARMSD PEMIKEIKNA VTIPVMAKAR
101: IGHFVEAQIL EAIGVDYVDE SEVLTLADED NHINKHNFKI PFVCGCRNLG EALRRIREGA AMIRTKGEAG TGNVVEAVRH VRSVNGAIRL LRSMDDDEVF
201: TYAKKIAAPY DLVVQTKELG RLPVVQFAAG GVATPADAAL MMQLGCDGVF VGSGVFKSGD PVKRAKAIVQ AVTNYRDAAV LAEVSCGLGE AMVGLNLDDK
301: VERFASRSE
101: IGHFVEAQIL EAIGVDYVDE SEVLTLADED NHINKHNFKI PFVCGCRNLG EALRRIREGA AMIRTKGEAG TGNVVEAVRH VRSVNGAIRL LRSMDDDEVF
201: TYAKKIAAPY DLVVQTKELG RLPVVQFAAG GVATPADAAL MMQLGCDGVF VGSGVFKSGD PVKRAKAIVQ AVTNYRDAAV LAEVSCGLGE AMVGLNLDDK
301: VERFASRSE
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.