CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: endoplasmic reticulum

Predictor Summary:

cytosol 4
vacuole 1
peroxisome 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

nucleus: 21132161
endoplasmic reticulum: 27224218
mitochondrion: 27780359
endoplasmic reticulum: 28499913

msms PMID: 21132161 doi

B Cooper, KB Campbell, J Feng, WM Garrett, R Frederick

Soybean Genomics and Improvement Laboratory, USDA-ARS, Beltsville, MD 20705, USA. bret.cooper@ars.usda.gov

msms PMID: 27780359 doi

G Mustafa, S Komatsu

Graduate School of Life and Environmental Science, University of Tsukuba , Tsukuba 305-8572, Japan., National Institute of Crop Science, National Agriculture and Food Research Organization , Tsukuba 305-8518, Japan.

msms PMID: 28499913 doi

S Komatsu, X Wang, X Yin, Y Nanjo, H Ohyanagi, K Sakata

Department of Life Science and Informatics, Maebashi Institute of Technology, Maebashi 371-0816, Japan. Electronic address: ksakata@maebashi-it.ac.jp., Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan., Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan; Faculty of Life and Environmental Sciences, University of Tsukuba, Tsukuba 305-8572, Japan., Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan; Faculty of Life and Environmental Sciences, University of Tsukuba, Tsukuba 305-8572, Japan. Electronic address: komatsu.setsuko.fu@u.tsukuba.ac.jp., King Abdullah University of Science and Technology (KAUST), Computational Bioscience Research Center (CBRC), Thuwal 23955-6900, Saudi Arabia.

msms PMID: 27224218 doi

X Wang, S Komatsu

Graduate School of Life and Environmental Sciences, University of Tsukuba , Tsukuba 305-8572, Japan., National Institute of Crop Science, National Agriculture and Food Research Organization , Tsukuba 305-8518, Japan.

PPI

Inferred distinct locusB in Crop

locusB	locations
KRH11075
KRH21198
KRH65766
KRH75832
KRH75883

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT2G38230.1	KRH11075	AT5G01410.1	16766694
AT2G38230.1	KRH21198	AT5G01410.1	16766694
AT2G38230.1	KRH65766	AT5G60540.1	16766694
AT2G38230.1	KRH75832	AT5G60540.1	16766694
AT2G38230.1	KRH75883	AT5G60540.1	16766694
AT5G01410.1	KRH11075	AT2G38230.1	16766694
AT5G01410.1	KRH21198	AT2G38230.1	16766694
AT5G01410.1	KRH11075	AT5G01410.1	16766694
AT5G01410.1	KRH21198	AT5G01410.1	16766694
AT5G01410.1	KRH11075	AT5G01410.1	21798944
AT5G01410.1	KRH21198	AT5G01410.1	21798944
AT5G01410.1	KRH65766	AT5G60540.1	16766694
AT5G01410.1	KRH75832	AT5G60540.1	16766694
AT5G01410.1	KRH75883	AT5G60540.1	16766694

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH11075	Soybean	endoplasmic reticulum, nucleus	99.04	99.04
Solyc06g081980.1.1	Tomato	extracellular, nucleus, plastid, unclear	93.57	94.17
PGSC0003DMT400078045	Potato	cytosol	93.25	93.85
Bra005687.1-P	Field mustard	cytosol	92.93	93.53
CDY11202	Canola	cytosol	92.93	93.53
CDX80774	Canola	cytosol	92.6	93.2
Bra028901.1-P	Field mustard	cytosol	92.28	92.88
CDY04839	Canola	cytosol	92.28	92.88
AT5G01410.1	Thale cress	cytosol	91.96	92.56
GSMUA_Achr1P25530_001	Banana	cytosol	73.31	89.06
GSMUA_Achr8P31880_001	Banana	cytosol	79.1	88.81
TraesCS2D01G267800.1	Wheat	cytosol	90.03	88.61
TraesCS2B01G287600.1	Wheat	cytosol	90.03	88.61
AT2G38230.1	Thale cress	cytosol	87.46	88.03
GSMUA_AchrUn_...	Banana	cytosol	72.35	87.89
HORVU2Hr1G065120.1	Barley	cytosol	89.07	87.66
CDX93320	Canola	cytosol	81.35	87.54
AT2G38210.1	Thale cress	cytosol, peroxisome, plastid	21.86	86.08
Os07t0100200-01	Rice	plasma membrane	87.78	85.85
OQU88300	Sorghum	cytosol	87.14	85.49
VIT_06s0004g06640.t01	Wine grape	cytosol	92.28	85.16
Os10t0100700-01	Rice	plasma membrane	84.89	84.34
Zm00001d018633_P001	Maize	cytosol	85.85	84.23
Zm00001d007936_P001	Maize	cytosol	85.85	84.23
TraesCS4D01G133600.1	Wheat	cytosol	84.89	84.08
HORVU4Hr1G027040.2	Barley	cytosol, peroxisome	85.21	83.86
TraesCS4A01G178700.1	Wheat	cytosol	84.57	83.76
TraesCS4B01G138900.1	Wheat	cytosol	84.57	83.76
CDY18400	Canola	cytosol	71.06	83.71
GSMUA_AchrUn_...	Banana	cytosol	71.38	75.25
TraesCS2A01G268800.1	Wheat	plastid	90.03	72.54
Os11t0708500-01	Rice	plasma membrane	80.71	69.15
Zm00001d018632_P001	Maize	extracellular	86.5	65.13
GSMUA_Achr1P27650_001	Banana	cytosol	13.83	51.81
Os10t0191600-00	Rice	plasma membrane	29.26	49.19

Protein Annotations

KEGG:00750+4.3.3.6	EntrezGene:100816306	Gene3D:3.20.20.70	MapMan:7.7.1.1	EMBL:ACUP02008347	InterPro:Aldolase_TIM
EnsemblPlantsGene:GLYMA_13G225000	GO:GO:0003674	GO:GO:0003824	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058
GO:GO:0009987	GO:GO:0042819	GO:GO:0042823	UniProt:I1M1P1	InterPro:IPR001852	InterPro:IPR013785
EnsemblPlants:KRH21198	ProteinID:KRH21198	ProteinID:KRH21198.1	HAMAP:MF_01824	PFAM:PF01680	PIRSF:PIRSF029271
ScanProsite:PS01235	PFscan:PS51129	PANTHER:PTHR31829	MetaCyc:PWY-6466	InterPro:PdxS/SNZ	InterPro:PdxS/SNZ_N
InterPro:RibuloseP-bd_barrel	SUPFAM:SSF51366	TIGRFAMs:TIGR00343	UniParc:UPI000233AC67	SEG:seg	:

Description

hypothetical protein

Coordinates

chr13:-:33791887..33794220

Molecular Weight (calculated)

33195.2 Da

IEP (calculated)

6.259

GRAVY (calculated)

0.072

Length

311 amino acids

Sequence
(BLAST)

001: MEGSGSGVVT VYGNGAITET KKSPFSVKVG LAQMLRGGVI MDVVNAEQAR IAEEAGACAV MALERVPADI RAQGGVARMS DPQLIKDIKR AVTIPVMAKA
101: RIGHFVEAQI LEAIGIDYVD ESEVLTLADD ANHINKHNFR IPFVCGCRNL GEALRRIREG AAMIRTKGEA GTGNIIEAVR HVRSVMSDIR VLRNMDDDEV
201: FTFAKSIAAP YDLVMQTKQL GRLPVVHFAA GGVATPADAA LMMQLGCDGV FVGSGVFKSG DPAKRARAIV QAVTHYSDPE VLAEVSCGLG EAMVGINLTD
301: DKVERFANRS E

Best Arabidopsis Sequence Match ( AT5G01410.2 )
(BLAST)

001: MEGTGVVAVY GNGAITEAKK SPFSVKVGLA QMLRGGVIMD VVNAEQARIA EEAGACAVMA LERVPADIRA QGGVARMSDP QMIKEIKQAV TIPVMAKARI
101: GHFVEAQILE AIGIDYIDES EVLTLADEDH HINKHNFRIP FVCGCRNLGE ALRRIREGAA MIRTKGEAGT GNIIEAVRHV RSVNGDIRVL RNMDDDEVFT
201: FAKKLAAPYD LVMQTKQLGR LPVVQFAAGG VATPADAALM MQLGCDGVFV GSGIFKSGDP ARRARAIVQA VTHYSDPEML VEVSCGLGEA MVGINLNDEK
301: VERFANRSE

Arabidopsis Description

PDX13RSR4 [Source:UniProtKB/TrEMBL;Acc:A0A178UIV6]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.