CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 1
plastid 1
peroxisome 1
mitochondrion 1
cytosol 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, nucleus, peroxisome
BaCelLo:	nucleus
iPSORT:	plastid
MultiLoc:	peroxisome
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

Inferred distinct locusB in Crop

locusB	locations
CDX80159
CDX80774
CDX93320
CDY04839
CDY09196
CDY11202
CDY18400
CDY20176
CDY31539
CDY50623

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G01410.1	CDX93320	AT2G38230.1	16766694
AT5G01410.1	CDY18400	AT2G38230.1	16766694
AT5G01410.1	CDY20176	AT3G16050.1	16766694
AT5G01410.1	CDY50623	AT3G16050.1	16766694
AT5G01410.1	CDY20176	AT3G16050.1	21798944
AT5G01410.1	CDY50623	AT3G16050.1	21798944
AT5G01410.1	CDX80774	AT5G01410.1	16766694
AT5G01410.1	CDY04839	AT5G01410.1	16766694
AT5G01410.1	CDY11202	AT5G01410.1	16766694
AT5G01410.1	CDX80774	AT5G01410.1	21798944
AT5G01410.1	CDY04839	AT5G01410.1	21798944
AT5G01410.1	CDY11202	AT5G01410.1	21798944
AT5G01410.1	CDX80159	AT5G60540.1	16766694
AT5G01410.1	CDY09196	AT5G60540.1	16766694
AT5G01410.1	CDY31539	AT5G60540.1	16766694

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY11202	Canola	cytosol	99.68	99.68
CDY04839	Canola	cytosol	99.03	99.03
AT5G01410.1	Thale cress	cytosol	98.06	98.06
KRH21198	Soybean	endoplasmic reticulum	93.2	92.6
KRH11075	Soybean	endoplasmic reticulum, nucleus	92.88	92.28
Solyc06g081980.1.1	Tomato	extracellular, nucleus, plastid, unclear	91.91	91.91
PGSC0003DMT400078045	Potato	cytosol	91.59	91.59
CDX93320	Canola	cytosol	82.85	88.58
GSMUA_Achr8P31880_001	Banana	cytosol	77.99	87.0
GSMUA_Achr1P25530_001	Banana	cytosol	71.2	85.94
GSMUA_AchrUn_...	Banana	cytosol	70.87	85.55
VIT_06s0004g06640.t01	Wine grape	cytosol	92.88	85.16
HORVU2Hr1G065120.1	Barley	cytosol	87.06	85.13
TraesCS2B01G287600.1	Wheat	cytosol	86.73	84.81
TraesCS2D01G267800.1	Wheat	cytosol	86.73	84.81
Os07t0100200-01	Rice	plasma membrane	87.06	84.59
CDY18400	Canola	cytosol	71.84	84.09
TraesCS4B01G138900.1	Wheat	cytosol	85.44	84.08
OQU88300	Sorghum	cytosol	86.08	83.91
TraesCS4D01G133600.1	Wheat	cytosol	85.11	83.76
Os10t0100700-01	Rice	plasma membrane	84.79	83.71
HORVU4Hr1G027040.2	Barley	cytosol, peroxisome	85.44	83.54
TraesCS4A01G178700.1	Wheat	cytosol	84.79	83.44
Zm00001d007936_P001	Maize	cytosol	85.11	82.97
Zm00001d018633_P001	Maize	cytosol	84.79	82.65
GSMUA_AchrUn_...	Banana	cytosol	69.9	73.22
TraesCS2A01G268800.1	Wheat	plastid	86.73	69.43
Os11t0708500-01	Rice	plasma membrane	80.91	68.87
Zm00001d018632_P001	Maize	extracellular	85.44	63.92
CDY20176	Canola	cytosol	59.87	60.86
Os10t0191600-00	Rice	plasma membrane	30.42	50.81
GSMUA_Achr1P27650_001	Banana	cytosol	13.27	49.4
CDY50623	Canola	plastid	62.14	47.64
CDY69119	Canola	mitochondrion	11.65	19.67

Protein Annotations

KEGG:00750+4.3.3.6	Gene3D:3.20.20.70	MapMan:7.7.1.1	GO:A0A078CXL1	InterPro:Aldolase_TIM	EnsemblPlants:CDX80774
ProteinID:CDX80774	ProteinID:CDX80774.1	GO:GO:0003674	GO:GO:0003824	GO:GO:0008150	GO:GO:0008152
GO:GO:0009058	GO:GO:0009987	GO:GO:0042819	GO:GO:0042823	EnsemblPlantsGene:GSBRNA2T00134147001	InterPro:IPR001852
InterPro:IPR013785	HAMAP:MF_01824	PFAM:PF01680	PIRSF:PIRSF029271	ScanProsite:PS01235	PFscan:PS51129
PANTHER:PTHR31829	MetaCyc:PWY-6466	InterPro:PdxS/SNZ	InterPro:PdxS/SNZ_N	InterPro:RibuloseP-bd_barrel	SUPFAM:SSF51366
TIGRFAMs:TIGR00343	UniPathway:UPA00245	UniParc:UPI00042D1ABC	SEG:seg	:	:

Description

BnaC03g00280D

Coordinates

chrLK031823:+:146505..147810

Molecular Weight (calculated)

33200.4 Da

IEP (calculated)

5.739

GRAVY (calculated)

0.050

Length

309 amino acids

Sequence
(BLAST)

001: MEGTSVVAVY GNGAITEAKK SPFSVKVGLA QMLRGGVIMD VVNAEQARIA EEAGACAVMA LERVPADIRA QGGVARMSDP QMIKDIKQAV TIPVMAKARI
101: GHFVEAQILE AIGIDYIDES EVLTLADEDN HINKHNFRIP FVCGCRNLGE ALRRIREGAA MIRTKGEAGT GNIVEAVRHV RSVMGDIRVL RNMDDDEVFT
201: FAKKLAAPYD LVMQTKQLGR LPVVQFAAGG VATPADAALM MQLGCDGVFV GSGIFKSGDP ARRARAIVQA VTHYSDPEML VEVSCGLGEA MVGINLNDDK
301: VERFANRSE

Best Arabidopsis Sequence Match ( AT5G01410.2 )
(BLAST)

001: MEGTGVVAVY GNGAITEAKK SPFSVKVGLA QMLRGGVIMD VVNAEQARIA EEAGACAVMA LERVPADIRA QGGVARMSDP QMIKEIKQAV TIPVMAKARI
101: GHFVEAQILE AIGIDYIDES EVLTLADEDH HINKHNFRIP FVCGCRNLGE ALRRIREGAA MIRTKGEAGT GNIIEAVRHV RSVNGDIRVL RNMDDDEVFT
201: FAKKLAAPYD LVMQTKQLGR LPVVQFAAGG VATPADAALM MQLGCDGVFV GSGIFKSGDP ARRARAIVQA VTHYSDPEML VEVSCGLGEA MVGINLNDEK
301: VERFANRSE

Arabidopsis Description

PDX13RSR4 [Source:UniProtKB/TrEMBL;Acc:A0A178UIV6]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.