Factsheet for GSMUA_Achr1P27650_001

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

extracellular 1
endoplasmic reticulum 1
vacuole 2
plasma membrane 1
golgi 1
plastid 2
cytosol 4
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, plastid, secretory
BaCelLo:	secretory
EpiLoc:	vacuole
iPSORT:	plastid
MultiLoc:	cytosol
Plant-mPloc:	cytosol, plastid
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

Inferred distinct locusB in Crop

locusB	locations
GSMUA_Achr1P25530_001
GSMUA_Achr1P27650_001
GSMUA_Achr7P07370_001
GSMUA_Achr8P31880_001
GSMUA_AchrUn_...
GSMUA_AchrUn_...

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT2G38230.1	GSMUA_Achr1P25530_001	AT5G01410.1	16766694
AT2G38230.1	GSMUA_Achr1P27650_001	AT5G01410.1	16766694
AT2G38230.1	GSMUA_Achr8P31880_001	AT5G01410.1	16766694
AT2G38230.1	GSMUA_AchrUn_...	AT5G01410.1	16766694
AT2G38230.1	GSMUA_AchrUn_...	AT5G01410.1	16766694
AT2G38230.1	GSMUA_Achr7P07370_001	AT5G60540.1	16766694
AT5G01410.1	GSMUA_Achr1P25530_001	AT2G38230.1	16766694
AT5G01410.1	GSMUA_Achr1P27650_001	AT2G38230.1	16766694
AT5G01410.1	GSMUA_Achr8P31880_001	AT2G38230.1	16766694
AT5G01410.1	GSMUA_AchrUn_...	AT2G38230.1	16766694
AT5G01410.1	GSMUA_AchrUn_...	AT2G38230.1	16766694
AT5G01410.1	GSMUA_Achr1P25530_001	AT5G01410.1	16766694
AT5G01410.1	GSMUA_Achr1P27650_001	AT5G01410.1	16766694
AT5G01410.1	GSMUA_Achr8P31880_001	AT5G01410.1	16766694
AT5G01410.1	GSMUA_AchrUn_...	AT5G01410.1	16766694
AT5G01410.1	GSMUA_AchrUn_...	AT5G01410.1	16766694
AT5G01410.1	GSMUA_Achr1P25530_001	AT5G01410.1	21798944
AT5G01410.1	GSMUA_Achr1P27650_001	AT5G01410.1	21798944
AT5G01410.1	GSMUA_Achr8P31880_001	AT5G01410.1	21798944
AT5G01410.1	GSMUA_AchrUn_...	AT5G01410.1	21798944
AT5G01410.1	GSMUA_AchrUn_...	AT5G01410.1	21798944
AT5G01410.1	GSMUA_Achr7P07370_001	AT5G60540.1	16766694

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
AT2G38210.1	Thale cress	cytosol, peroxisome, plastid	38.55	40.51
GSMUA_AchrUn_...	Banana	cytosol	65.06	21.09
GSMUA_Achr1P25530_001	Banana	cytosol	63.86	20.7
GSMUA_AchrUn_...	Banana	cytosol	66.27	18.64
GSMUA_Achr8P31880_001	Banana	cytosol	61.45	18.41
Zm00001d007936_P001	Maize	cytosol	57.83	15.14
OQU88300	Sorghum	cytosol	56.63	14.83
CDY18400	Canola	cytosol	44.58	14.02
Solyc06g081980.1.1	Tomato	extracellular, nucleus, plastid, unclear	51.81	13.92
PGSC0003DMT400078045	Potato	cytosol	51.81	13.92
Zm00001d018633_P001	Maize	cytosol	53.01	13.88
KRH21198	Soybean	endoplasmic reticulum	51.81	13.83
KRH11075	Soybean	endoplasmic reticulum, nucleus	51.81	13.83
CDY11202	Canola	cytosol	50.6	13.59
AT5G01410.1	Thale cress	cytosol	50.6	13.59
CDY04839	Canola	cytosol	50.6	13.59
Bra005687.1-P	Field mustard	cytosol	50.6	13.59
Bra028901.1-P	Field mustard	cytosol	50.6	13.59
Os07t0100200-01	Rice	plasma membrane	51.81	13.52
CDX93320	Canola	cytosol	46.99	13.49
TraesCS2D01G267800.1	Wheat	cytosol	50.6	13.29
AT2G38230.1	Thale cress	cytosol	49.4	13.27
CDX80774	Canola	cytosol	49.4	13.27
TraesCS4B01G138900.1	Wheat	cytosol	49.4	13.06
TraesCS4D01G133600.1	Wheat	cytosol	49.4	13.06
TraesCS2B01G287600.1	Wheat	cytosol	49.4	12.97
HORVU4Hr1G027040.2	Barley	cytosol, peroxisome	49.4	12.97
VIT_06s0004g06640.t01	Wine grape	cytosol	51.81	12.76
TraesCS4A01G178700.1	Wheat	cytosol	48.19	12.74
HORVU2Hr1G065120.1	Barley	cytosol	48.19	12.66
Os10t0100700-01	Rice	plasma membrane	44.58	11.82
Zm00001d018632_P001	Maize	extracellular	55.42	11.14
TraesCS2A01G268800.1	Wheat	plastid	50.6	10.88
Os11t0708500-01	Rice	plasma membrane	44.58	10.19
Os10t0191600-00	Rice	plasma membrane	2.41	1.08

Protein Annotations

KEGG:00750+4.3.3.6	Gene3D:3.20.20.70	MapMan:35.2	InterPro:Aldolase_TIM	GO:GO:0003674	GO:GO:0003824
GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0005773	GO:GO:0005774
GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	GO:GO:0016020	GO:GO:0042819
GO:GO:0042823	EnsemblPlantsGene:GSMUA_Achr1G27650_001	EnsemblPlants:GSMUA_Achr1P27650_001	EnsemblPlants:GSMUA_Achr1T27650_001	InterPro:IPR001852	InterPro:IPR013785
UniProt:M0S3M2	PFscan:PS51129	InterPro:PdxS/SNZ	UniParc:UPI000295F129	SEG:seg	:

Description

Hypothetical protein [Source:GMGC_GENE;Acc:GSMUA_Achr1G27650_001]

Coordinates

chr1:-:25075150..25075401

Molecular Weight (calculated)

8621.7 Da

IEP (calculated)

11.907

GRAVY (calculated)

-0.272

Length

83 amino acids

Sequence
(BLAST)

1: MSDSGVVMVY GNGAALTEPK KSSTFSMKVG LAQMLRGGVI MDVVTPGPRC RGGGRLCRHG ARACPCGHPR PRRRRPLGGA TAG

Best Arabidopsis Sequence Match ( AT2G38210.1 )
(BLAST)

1: MAGTGVVAVY GEGAMTETKQ KSPFSVKVGL AQMLRGGVIM DVVNAEQARI AEEAGACAVM ALERVPADIR AQGGVARFC

Arabidopsis Description

PDX1L4Pyridoxal 5'-phosphate synthase PDX1-like 4 [Source:UniProtKB/Swiss-Prot;Acc:O80446]
SUBAcon: [peroxisome,plastid,cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.