Factsheet for Bra028901.1-P

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 1
vacuole 1
peroxisome 1
cytosol 3
mitochondrion 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
Bra002473.1-P
Bra005687.1-P
Bra021157.1-P
Bra028901.1-P

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G01410.1	Bra021157.1-P	AT3G16050.1	16766694
AT5G01410.1	Bra021157.1-P	AT3G16050.1	21798944
AT5G01410.1	Bra005687.1-P	AT5G01410.1	16766694
AT5G01410.1	Bra028901.1-P	AT5G01410.1	16766694
AT5G01410.1	Bra005687.1-P	AT5G01410.1	21798944
AT5G01410.1	Bra028901.1-P	AT5G01410.1	21798944
AT5G01410.1	Bra002473.1-P	AT5G60540.1	16766694

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY04839	Canola	cytosol	100.0	100.0
Bra005687.1-P	Field mustard	cytosol	98.71	98.71
AT5G01410.1	Thale cress	cytosol	98.38	98.38
KRH21198	Soybean	endoplasmic reticulum	92.88	92.28
KRH11075	Soybean	endoplasmic reticulum, nucleus	92.56	91.96
Solyc06g081980.1.1	Tomato	extracellular, nucleus, plastid, unclear	91.59	91.59
PGSC0003DMT400078045	Potato	cytosol	91.26	91.26
GSMUA_Achr8P31880_001	Banana	cytosol	77.67	86.64
GSMUA_Achr1P25530_001	Banana	cytosol	71.52	86.33
GSMUA_AchrUn_...	Banana	cytosol	71.2	85.94
HORVU2Hr1G065120.1	Barley	cytosol	87.38	85.44
TraesCS2B01G287600.1	Wheat	cytosol	87.06	85.13
TraesCS2D01G267800.1	Wheat	cytosol	87.06	85.13
Os07t0100200-01	Rice	plasma membrane	87.38	84.91
VIT_06s0004g06640.t01	Wine grape	cytosol	92.56	84.87
TraesCS4B01G138900.1	Wheat	cytosol	85.76	84.39
OQU88300	Sorghum	cytosol	86.41	84.23
TraesCS4D01G133600.1	Wheat	cytosol	85.44	84.08
HORVU4Hr1G027040.2	Barley	cytosol, peroxisome	85.76	83.86
TraesCS4A01G178700.1	Wheat	cytosol	85.11	83.76
Os10t0100700-01	Rice	plasma membrane	84.79	83.71
Zm00001d007936_P001	Maize	cytosol	85.44	83.28
Zm00001d018633_P001	Maize	cytosol	85.11	82.97
GSMUA_AchrUn_...	Banana	cytosol	69.58	72.88
TraesCS2A01G268800.1	Wheat	plastid	87.06	69.69
Os11t0708500-01	Rice	plasma membrane	81.23	69.15
Zm00001d018632_P001	Maize	extracellular	85.76	64.16
Bra021157.1-P	Field mustard	cytosol	60.19	61.18
Os10t0191600-00	Rice	plasma membrane	30.42	50.81
GSMUA_Achr1P27650_001	Banana	cytosol	13.59	50.6

Protein Annotations

KEGG:00750+4.3.3.6	Gene3D:3.20.20.70	MapMan:7.7.1.1	InterPro:Aldolase_TIM	EnsemblPlantsGene:Bra028901	EnsemblPlants:Bra028901.1
EnsemblPlants:Bra028901.1-P	GO:GO:0003674	GO:GO:0003824	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058
GO:GO:0009987	GO:GO:0042819	GO:GO:0042823	InterPro:IPR001852	InterPro:IPR013785	UniProt:M4EJD5
HAMAP:MF_01824	PFAM:PF01680	PIRSF:PIRSF029271	ScanProsite:PS01235	PFscan:PS51129	PANTHER:PTHR31829
InterPro:PdxS/SNZ	InterPro:PdxS/SNZ_N	InterPro:RibuloseP-bd_barrel	SUPFAM:SSF51366	TIGRFAMs:TIGR00343	UniParc:UPI00025435D0
SEG:seg	:	:	:	:	:

Description

AT5G01410 (E=1e-163) PDX1, ATPDX1.3, RSR4, PDX1.3, ATPDX1 | RSR4 (REDUCED SUGAR RESPONSE 4); protein heterodimerization/ protein homodimerization

Coordinates

chrA02:+:1502488..1503417

Molecular Weight (calculated)

33179.4 Da

IEP (calculated)

5.986

GRAVY (calculated)

0.052

Length

309 amino acids

Sequence
(BLAST)

001: MEGTGVVAVY GNGAITEAKK SPFSVKVGLA QMLRGGVIMD VVNADQARIA EEAGACAVMA LERVPADIRA QGGVARMSDP QMIKDIKQAV TIPVMAKARI
101: GHFVEAQILE AIGIDYIDES EVLTLADEDH HINKHNFRIP FVCGCRNLGE ALRRIREGAA MIRTKGEAGT GNIVEAVRHV RSVMGDIRVL RNMDDDEVFT
201: FAKKLAAPYD LVMQTKQLGR LPVVQFAAGG VATPADAALM MQLGCDGVFV GSGIFKSGDP ARRARAIVQA VTHYSDPEML VEVSCGLGEA MVGINLNDDK
301: VERFANRSE

Best Arabidopsis Sequence Match ( AT5G01410.2 )
(BLAST)

001: MEGTGVVAVY GNGAITEAKK SPFSVKVGLA QMLRGGVIMD VVNAEQARIA EEAGACAVMA LERVPADIRA QGGVARMSDP QMIKEIKQAV TIPVMAKARI
101: GHFVEAQILE AIGIDYIDES EVLTLADEDH HINKHNFRIP FVCGCRNLGE ALRRIREGAA MIRTKGEAGT GNIIEAVRHV RSVNGDIRVL RNMDDDEVFT
201: FAKKLAAPYD LVMQTKQLGR LPVVQFAAGG VATPADAALM MQLGCDGVFV GSGIFKSGDP ARRARAIVQA VTHYSDPEML VEVSCGLGEA MVGINLNDEK
301: VERFANRSE

Arabidopsis Description

PDX13RSR4 [Source:UniProtKB/TrEMBL;Acc:A0A178UIV6]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.