Factsheet for Bra021157.1-P

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 1
plastid 1
vacuole 1
peroxisome 1
cytosol 3
mitochondrion 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
Bra005687.1-P
Bra021157.1-P
Bra028901.1-P

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G16050.1	Bra021157.1-P	AT3G16050.1	16766694
AT3G16050.1	Bra005687.1-P	AT5G01410.1	16766694
AT3G16050.1	Bra028901.1-P	AT5G01410.1	16766694
AT3G16050.1	Bra005687.1-P	AT5G01410.1	21798944
AT3G16050.1	Bra028901.1-P	AT5G01410.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY20176	Canola	cytosol	97.7	97.7
AT3G16050.1	Thale cress	cytosol	84.54	81.85
CDY50623	Canola	plastid	92.11	69.48
VIT_09s0002g04490.t01	Wine grape	cytosol	64.8	67.24
Solyc03g120090.1.1	Tomato	cytosol	64.47	64.26
PGSC0003DMT400014295	Potato	cytosol	62.83	62.62
Bra005687.1-P	Field mustard	cytosol	61.18	60.19
Bra028901.1-P	Field mustard	cytosol	61.18	60.19

Protein Annotations

KEGG:00750+4.3.3.6	Gene3D:3.20.20.70	MapMan:7.7.1.1	InterPro:Aldolase_TIM	EnsemblPlantsGene:Bra021157	EnsemblPlants:Bra021157.1
EnsemblPlants:Bra021157.1-P	GO:GO:0003674	GO:GO:0003824	GO:GO:0005488	GO:GO:0005515	GO:GO:0005575
GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0005829	GO:GO:0008150	GO:GO:0008152
GO:GO:0009058	GO:GO:0009987	GO:GO:0042819	GO:GO:0042823	GO:GO:0046982	InterPro:IPR001852
InterPro:IPR013785	UniProt:M4DXB1	PFAM:PF01680	PIRSF:PIRSF029271	ScanProsite:PS01235	PFscan:PS51129
PANTHER:PTHR31829	PANTHER:PTHR31829:SF2	InterPro:PdxS/SNZ	InterPro:PdxS/SNZ_N	InterPro:RibuloseP-bd_barrel	SUPFAM:SSF51366
UniParc:UPI0002543BD8	:	:	:	:	:

Description

AT3G16050 (E=7e-149) A37, ATPDX1.2, PDX1.2 | A37; protein heterodimerization

Coordinates

chrA01:+:23669874..23670788

Molecular Weight (calculated)

32497.9 Da

IEP (calculated)

6.170

GRAVY (calculated)

-0.024

Length

304 amino acids

Sequence
(BLAST)

001: MADHDQGAVT LYSGAAITDA AKKNHSFSVK VGLAQVLRGG AVVEVSSVNQ AKIAESAGAC AVLISDPPRS GVQRMPDPAL VKEVKRAVSV PAMARARVGH
101: FVEAQILEHL AVDYIDESEI ISVADEGNFI NKHNFRSPFI CGCRDTGEAL RRIREGAAMI RIQGDVTRTG NVAETVRNVR RVMGDVRVLN NMDDDEVFAF
201: AKKLSAPYDL VAQTKQMGRV PVVQFASGGV TTPADAALMM QLGCDGVFVG SEVFEGADPF KRVRSIVQAV QHYNDPHVLA EMSSGLESAM ESLSVSGDRI
301: QGSV

Best Arabidopsis Sequence Match ( AT3G16050.1 )
(BLAST)

001: MADQAMTDQD QGAVTLYSGT AITDAKKNHP FSVKVGLAQV LRGGAIVEVS SVNQAKLAES AGACSVIVSD PVRSRGGVRR MPDPVLIKEV KRAVSVPVMA
101: RARVGHFVEA QILESLAVDY IDESEIISVA DDDHFINKHN FRSPFICGCR DTGEALRRIR EGAAMIRIQG DLTATGNIAE TVKNVRSLMG EVRVLNNMDD
201: DEVFTFAKKI SAPYDLVAQT KQMGRVPVVQ FASGGITTPA DAALMMQLGC DGVFVGSEVF DGPDPFKKLR SIVQAVQHYN DPHVLAEMSS GLENAMESLN
301: VRGDRIQDFG QGSV

Arabidopsis Description

PDX12Pyridoxal 5'-phosphate synthase-like subunit PDX1.2 [Source:UniProtKB/Swiss-Prot;Acc:Q9ZNR6]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.