Factsheet for PGSC0003DMT400014295

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

cytosol 4
vacuole 1
peroxisome 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
PGSC0003DMT400014295
PGSC0003DMT400078045

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G16050.1	PGSC0003DMT400078045	AT2G38230.1	16766694
AT3G16050.1	PGSC0003DMT400014295	AT3G16050.1	16766694
AT3G16050.1	PGSC0003DMT400078045	AT5G01410.1	16766694
AT3G16050.1	PGSC0003DMT400078045	AT5G01410.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc03g120090.1.1	Tomato	cytosol	98.03	98.03
VIT_09s0002g04490.t01	Wine grape	cytosol	67.87	70.65
AT3G16050.1	Thale cress	cytosol	67.21	65.29
PGSC0003DMT400078045	Potato	cytosol	65.25	64.4
CDY20176	Canola	cytosol	63.93	64.14
Bra021157.1-P	Field mustard	cytosol	62.62	62.83
CDY50623	Canola	plastid	65.57	49.63

Protein Annotations

KEGG:00750+4.3.3.6	EntrezGene:102588309	Gene3D:3.20.20.70	MapMan:7.7.1.1	InterPro:Aldolase_TIM	GO:GO:0003674
GO:GO:0003824	GO:GO:0005488	GO:GO:0005515	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623
GO:GO:0005737	GO:GO:0005829	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987
GO:GO:0042819	GO:GO:0042823	GO:GO:0046982	InterPro:IPR001852	InterPro:IPR013785	UniProt:M1A3Z1
PFAM:PF01680	EnsemblPlantsGene:PGSC0003DMG400005690	PGSC:PGSC0003DMG400005690	EnsemblPlants:PGSC0003DMT400014295	PIRSF:PIRSF029271	PFscan:PS51129
PANTHER:PTHR31829	PANTHER:PTHR31829:SF2	InterPro:PdxS/SNZ	InterPro:PdxS/SNZ_N	InterPro:RibuloseP-bd_barrel	SUPFAM:SSF51366
UniParc:UPI000295D2AE	RefSeq:XP_006341676.1	:	:	:	:

Description

Pyridoxin biosynthesis protein PDX1 [Source:PGSC_GENE;Acc:PGSC0003DMG400005690]

Coordinates

chr3:+:59474428..59476884

Molecular Weight (calculated)

32769.4 Da

IEP (calculated)

5.215

GRAVY (calculated)

0.007

Length

305 amino acids

Sequence
(BLAST)

001: MEEDGAVTVY SGSAITDTKK NTFSIKVGIA QMLRGGAIAE VTTVNQAKIA ESAGVCCLVV SEPKGPGISR MPDPSLIKEI KQAVALPVMA KARVGHFVEA
101: QILEAIGVDY IDESETLALA DEDHFVNKHN FRAPFVCGCR DLGEALRRVR EGAAMVRTQG DLAGTGSIVD TVHNVRKVMG DIRILSNMDD DEVFTFSKKI
201: GAPYDIVAQT KQMGRLPVVH FAAGGIVTPA DAAFMMQLGC DGVFIGSDIF NCSNPYKKVR AIVQAVRNYN DPHILAAASS GLEEAMGGLN LNENRVERFV
301: SDETY

Best Arabidopsis Sequence Match ( AT3G16050.1 )
(BLAST)

001: MADQAMTDQD QGAVTLYSGT AITDAKKNHP FSVKVGLAQV LRGGAIVEVS SVNQAKLAES AGACSVIVSD PVRSRGGVRR MPDPVLIKEV KRAVSVPVMA
101: RARVGHFVEA QILESLAVDY IDESEIISVA DDDHFINKHN FRSPFICGCR DTGEALRRIR EGAAMIRIQG DLTATGNIAE TVKNVRSLMG EVRVLNNMDD
201: DEVFTFAKKI SAPYDLVAQT KQMGRVPVVQ FASGGITTPA DAALMMQLGC DGVFVGSEVF DGPDPFKKLR SIVQAVQHYN DPHVLAEMSS GLENAMESLN
301: VRGDRIQDFG QGSV

Arabidopsis Description

PDX12Pyridoxal 5'-phosphate synthase-like subunit PDX1.2 [Source:UniProtKB/Swiss-Prot;Acc:Q9ZNR6]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.