CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

cytosol 1
plastid 2
peroxisome 1
mitochondrion 1
plasma membrane 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plastid
Any Predictor:	cytosol, peroxisome, plastid
BaCelLo:	cytosol
ChloroP:	plastid
MultiLoc:	peroxisome
PProwler:	mitochondrion
WoLF PSORT:	plasma membrane
YLoc:	plastid

PPI

Inferred distinct locusB in Crop

locusB	locations
CDX80774
CDX93320
CDY04839
CDY11202
CDY18400
CDY20176
CDY50623

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G16050.1	CDX93320	AT2G38230.1	16766694
AT3G16050.1	CDY18400	AT2G38230.1	16766694
AT3G16050.1	CDY20176	AT3G16050.1	16766694
AT3G16050.1	CDY50623	AT3G16050.1	16766694
AT3G16050.1	CDX80774	AT5G01410.1	16766694
AT3G16050.1	CDY04839	AT5G01410.1	16766694
AT3G16050.1	CDY11202	AT5G01410.1	16766694
AT3G16050.1	CDX80774	AT5G01410.1	21798944
AT3G16050.1	CDY04839	AT5G01410.1	21798944
AT3G16050.1	CDY11202	AT5G01410.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY20176	Canola	cytosol	70.22	93.09
Bra021157.1-P	Field mustard	cytosol	69.48	92.11
AT3G16050.1	Thale cress	cytosol	64.52	82.8
Solyc03g120090.1.1	Tomato	cytosol	50.62	66.89
VIT_09s0002g04490.t01	Wine grape	cytosol	48.39	66.55
PGSC0003DMT400014295	Potato	cytosol	49.63	65.57
CDX80774	Canola	cytosol	47.64	62.14
CDY04839	Canola	cytosol	47.64	62.14
CDY11202	Canola	cytosol	47.64	62.14
CDX93320	Canola	cytosol	42.93	59.86
CDY18400	Canola	cytosol	36.23	55.3
CDY69119	Canola	mitochondrion	9.93	21.86

Protein Annotations

KEGG:00750+4.3.3.6	Gene3D:3.20.20.70	MapMan:7.7.1.1	GO:A0A078INI4	UniProt:A0A078INI4	InterPro:Aldolase_TIM
EnsemblPlants:CDY50623	ProteinID:CDY50623	ProteinID:CDY50623.1	GO:GO:0003674	GO:GO:0003824	GO:GO:0005215
GO:GO:0005575	GO:GO:0006810	GO:GO:0008150	GO:GO:0008152	GO:GO:0008272	GO:GO:0009058
GO:GO:0009987	GO:GO:0015116	GO:GO:0016020	GO:GO:0016021	GO:GO:0042819	GO:GO:0042823
GO:GO:1902358	EnsemblPlantsGene:GSBRNA2T00097164001	InterPro:IPR001852	InterPro:IPR013785	PFAM:PF00916	PFAM:PF01680
ScanProsite:PS01235	PFscan:PS51129	PANTHER:PTHR31829	PANTHER:PTHR31829:SF2	MetaCyc:PWY-6466	InterPro:PdxS/SNZ
InterPro:PdxS/SNZ_N	InterPro:RibuloseP-bd_barrel	InterPro:SLC26A/SulP_dom	SUPFAM:SSF51366	TMHMM:TMhelix	UniPathway:UPA00245
UniParc:UPI0004EEA6C3	SEG:seg	:	:	:	:

Description

BnaC01g44250DBnaC01g44250D protein [Source:UniProtKB/TrEMBL;Acc:A0A078INI4]

Coordinates

chrLK032927:+:57455..59556

Molecular Weight (calculated)

43644.8 Da

IEP (calculated)

6.242

GRAVY (calculated)

0.160

Length

403 amino acids

Sequence
(BLAST)

001: MADHDQGAVT LYSGTAITDA AKKNHPFSVK VGLAQVLRGG AVVEVSSVNQ AKIAESAGAC AVLISDPPRS PATAGVQRMP DPALVKEVKR AVSVPVMARA
101: RVGHFVEAQI LEHLAVDYID ESEIISVADE GNFINKHNFR SPFICGCRDT GEALRRIREG AAMIRIQGDV TRTGNVAETV RNVRRVMGDV RVLNNMDDDE
201: VFAFAKKLSA PYDLVAQTKQ MGRVPVVQFA SGGITTPADA ALMMQLGCDG VFVGCEVFEG TDPFKRVRSI VQAVQHYNDP HVLAEMSSGL ESAMESLSLL
301: FYYTPNLILA AIILTAVIGL IDYQAAYKLW KVDKFEFFTC MCSFFGVLLV SVPLGLAIAV SGSFSSQDLV ACNPAKHCRI WKHPMDSDIS VLEDTEKLIS
401: MRG

Best Arabidopsis Sequence Match ( AT3G16050.1 )
(BLAST)

001: MADQAMTDQD QGAVTLYSGT AITDAKKNHP FSVKVGLAQV LRGGAIVEVS SVNQAKLAES AGACSVIVSD PVRSRGGVRR MPDPVLIKEV KRAVSVPVMA
101: RARVGHFVEA QILESLAVDY IDESEIISVA DDDHFINKHN FRSPFICGCR DTGEALRRIR EGAAMIRIQG DLTATGNIAE TVKNVRSLMG EVRVLNNMDD
201: DEVFTFAKKI SAPYDLVAQT KQMGRVPVVQ FASGGITTPA DAALMMQLGC DGVFVGSEVF DGPDPFKKLR SIVQAVQHYN DPHVLAEMSS GLENAMESLN
301: VRGDRIQDFG QGSV

Arabidopsis Description

PDX12Pyridoxal 5'-phosphate synthase-like subunit PDX1.2 [Source:UniProtKB/Swiss-Prot;Acc:Q9ZNR6]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.