CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 1
plastid 1
peroxisome 1
mitochondrion 1
cytosol 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, nucleus, peroxisome, plastid
BaCelLo:	nucleus
ChloroP:	plastid
MultiLoc:	peroxisome
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

Inferred distinct locusB in Crop

locusB	locations
CDX80774
CDX93320
CDY04839
CDY11202
CDY18400
CDY20176
CDY50623

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G16050.1	CDX93320	AT2G38230.1	16766694
AT3G16050.1	CDY18400	AT2G38230.1	16766694
AT3G16050.1	CDY20176	AT3G16050.1	16766694
AT3G16050.1	CDY50623	AT3G16050.1	16766694
AT3G16050.1	CDX80774	AT5G01410.1	16766694
AT3G16050.1	CDY04839	AT5G01410.1	16766694
AT3G16050.1	CDY11202	AT5G01410.1	16766694
AT3G16050.1	CDX80774	AT5G01410.1	21798944
AT3G16050.1	CDY04839	AT5G01410.1	21798944
AT3G16050.1	CDY11202	AT5G01410.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Bra021157.1-P	Field mustard	cytosol	97.7	97.7
AT3G16050.1	Thale cress	cytosol	85.86	83.12
CDY50623	Canola	plastid	93.09	70.22
VIT_09s0002g04490.t01	Wine grape	cytosol	64.8	67.24
Solyc03g120090.1.1	Tomato	cytosol	65.79	65.57
PGSC0003DMT400014295	Potato	cytosol	64.14	63.93
CDX80774	Canola	cytosol	60.86	59.87
CDY04839	Canola	cytosol	60.86	59.87
CDY11202	Canola	cytosol	60.86	59.87
CDX93320	Canola	cytosol	54.28	57.09
CDY18400	Canola	cytosol	45.72	52.65
CDY69119	Canola	mitochondrion	12.5	20.77

Protein Annotations

KEGG:00750+4.3.3.6	Gene3D:3.20.20.70	MapMan:7.7.1.1	GO:A0A078G474	UniProt:A0A078G474	InterPro:Aldolase_TIM
EnsemblPlants:CDY20176	ProteinID:CDY20176	ProteinID:CDY20176.1	GO:GO:0003674	GO:GO:0003824	GO:GO:0008150
GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	GO:GO:0042819	GO:GO:0042823	EnsemblPlantsGene:GSBRNA2T00010044001
InterPro:IPR001852	InterPro:IPR013785	PFAM:PF01680	PIRSF:PIRSF029271	ScanProsite:PS01235	PFscan:PS51129
PANTHER:PTHR31829	PANTHER:PTHR31829:SF2	MetaCyc:PWY-6466	InterPro:PdxS/SNZ	InterPro:PdxS/SNZ_N	InterPro:RibuloseP-bd_barrel
SUPFAM:SSF51366	UniPathway:UPA00245	UniParc:UPI0004EE72E2	:	:	:

Description

BnaA01g28260DBnaA01g28260D protein [Source:UniProtKB/TrEMBL;Acc:A0A078G474]

Coordinates

chrLK032103:-:545149..546063

Molecular Weight (calculated)

32457.8 Da

IEP (calculated)

5.644

GRAVY (calculated)

-0.010

Length

304 amino acids

Sequence
(BLAST)

001: MADHDQGAVT LYSGAAITDA AKKNHSFSVK VGLAQVLRGG AVVEVSSVNQ AKIAESAGAC AVLISDPPRS GVQRMPDPAL VKEVKRAVSV PAMARARVGH
101: FVEAQILEHL AVDYIDESEI ISVADEGNFI NKHNFRSPFI CGCRDTGEAL RRIREGAAMI RIQGDVTRTG NVAETVRNVR TVMGDVRVLN NMDDDEVFAF
201: AKKLSAPYDL VAQTKQMGRV PVVQFASGGI TTPADAALMM QLGCDGVFVG SEVFEGADPF KRVRSIVQAV QHYNDPHVLA EMSSGLESAM ESLSVSGDRI
301: EGSV

Best Arabidopsis Sequence Match ( AT3G16050.1 )
(BLAST)

001: MADQAMTDQD QGAVTLYSGT AITDAKKNHP FSVKVGLAQV LRGGAIVEVS SVNQAKLAES AGACSVIVSD PVRSRGGVRR MPDPVLIKEV KRAVSVPVMA
101: RARVGHFVEA QILESLAVDY IDESEIISVA DDDHFINKHN FRSPFICGCR DTGEALRRIR EGAAMIRIQG DLTATGNIAE TVKNVRSLMG EVRVLNNMDD
201: DEVFTFAKKI SAPYDLVAQT KQMGRVPVVQ FASGGITTPA DAALMMQLGC DGVFVGSEVF DGPDPFKKLR SIVQAVQHYN DPHVLAEMSS GLENAMESLN
301: VRGDRIQDFG QGSV

Arabidopsis Description

PDX12Pyridoxal 5'-phosphate synthase-like subunit PDX1.2 [Source:UniProtKB/Swiss-Prot;Acc:Q9ZNR6]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.