CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

plastid 2
mitochondrion 4
cytosol 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY20176	Canola	cytosol	20.77	12.5
CDX80774	Canola	cytosol	19.67	11.65
CDY04839	Canola	cytosol	19.67	11.65
CDY11202	Canola	cytosol	19.67	11.65
CDX93320	Canola	cytosol	17.49	11.07
CDY18400	Canola	cytosol	15.3	10.61
CDY50623	Canola	plastid	21.86	9.93

Protein Annotations

KEGG:00750+4.3.3.6	Gene3D:3.20.20.70	MapMan:35.2	GO:A0A078JQN6	UniProt:A0A078JQN6	InterPro:Aldolase_TIM
EnsemblPlants:CDY69119	ProteinID:CDY69119	ProteinID:CDY69119.1	ncoils:Coil	GO:GO:0003674	GO:GO:0003824
GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	GO:GO:0042819	GO:GO:0042823
EnsemblPlantsGene:GSBRNA2T00083447001	InterPro:IPR001852	InterPro:IPR013785	ScanProsite:PS01235	PFscan:PS51129	PANTHER:PTHR31829
MetaCyc:PWY-6466	InterPro:PdxS/SNZ	InterPro:RibuloseP-bd_barrel	SUPFAM:SSF51366	UniPathway:UPA00245	UniParc:UPI0004EC48D8
SEG:seg	:	:	:	:	:

Description

BnaC08g47410DBnaC08g47410D protein [Source:UniProtKB/TrEMBL;Acc:A0A078JQN6]

Coordinates

chrLK038689:-:1196..1911

Molecular Weight (calculated)

21235.8 Da

IEP (calculated)

10.792

GRAVY (calculated)

-0.508

Length

183 amino acids

Sequence
(BLAST)

001: MVSLRRCFQR AMRENFNRPL EREGKTQTAW MRRWSRWSRL PVVQFAAGGV ATPADAALLM QLGCDGVFVG SDIFRRDGFP NRVKRLRGEA KVEQGGVRRK
101: VSISEEDSRR KKPVSNVTVW KEKKKARKEV YNTAYELLEK NQEVGFGCQK IIIDMRGFVE DLDHNLSLIV DLVKHEITRL VWI

Best Arabidopsis Sequence Match ( AT5G01410.1 )
(BLAST)

001: MEGTGVVAVY GNGAITEAKK SPFSVKVGLA QMLRGGVIMD VVNAEQARIA EEAGACAVMA LERVPADIRA QGGVARMSDP QMIKEIKQAV TIPVMAKARI
101: GHFVEAQILE AIGIDYIDES EVLTLADEDH HINKHNFRIP FVCGCRNLGE ALRRIREGAA MIRTKGEAGT GNIIEAVRHV RSVNGDIRVL RNMDDDEVFT
201: FAKKLAAPYD LVMQTKQLGR LPVVQFAAGG VATPADAALM MQLGCDGVFV GSGIFKSGDP ARRARAIVQA VTHYSDPEML VEVSCGLGEA MVGINLNDEK
301: VERFANRSE

Arabidopsis Description

PDX13RSR4 [Source:UniProtKB/TrEMBL;Acc:A0A178UIV6]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.