CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 1
vacuole 1
plastid 1
peroxisome 1
cytosol 3
mitochondrion 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
CDX80159
CDX80774
CDX93320
CDY04839
CDY09196
CDY11202
CDY18400
CDY20176
CDY31539
CDY50623

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G01410.1	CDX93320	AT2G38230.1	16766694
AT5G01410.1	CDY18400	AT2G38230.1	16766694
AT5G01410.1	CDY20176	AT3G16050.1	16766694
AT5G01410.1	CDY50623	AT3G16050.1	16766694
AT5G01410.1	CDY20176	AT3G16050.1	21798944
AT5G01410.1	CDY50623	AT3G16050.1	21798944
AT5G01410.1	CDX80774	AT5G01410.1	16766694
AT5G01410.1	CDY04839	AT5G01410.1	16766694
AT5G01410.1	CDY11202	AT5G01410.1	16766694
AT5G01410.1	CDX80774	AT5G01410.1	21798944
AT5G01410.1	CDY04839	AT5G01410.1	21798944
AT5G01410.1	CDY11202	AT5G01410.1	21798944
AT5G01410.1	CDX80159	AT5G60540.1	16766694
AT5G01410.1	CDY09196	AT5G60540.1	16766694
AT5G01410.1	CDY31539	AT5G60540.1	16766694

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Bra005687.1-P	Field mustard	cytosol	100.0	100.0
CDX80774	Canola	cytosol	99.68	99.68
CDY04839	Canola	cytosol	98.71	98.71
AT5G01410.1	Thale cress	cytosol	97.73	97.73
KRH21198	Soybean	endoplasmic reticulum	93.53	92.93
KRH11075	Soybean	endoplasmic reticulum, nucleus	93.2	92.6
Solyc06g081980.1.1	Tomato	extracellular, nucleus, plastid, unclear	92.23	92.23
PGSC0003DMT400078045	Potato	cytosol	91.91	91.91
CDX93320	Canola	cytosol	82.85	88.58
GSMUA_Achr8P31880_001	Banana	cytosol	78.32	87.36
GSMUA_Achr1P25530_001	Banana	cytosol	71.52	86.33
GSMUA_AchrUn_...	Banana	cytosol	71.2	85.94
VIT_06s0004g06640.t01	Wine grape	cytosol	93.2	85.46
HORVU2Hr1G065120.1	Barley	cytosol	87.38	85.44
TraesCS2B01G287600.1	Wheat	cytosol	87.06	85.13
TraesCS2D01G267800.1	Wheat	cytosol	87.06	85.13
Os07t0100200-01	Rice	plasma membrane	86.73	84.28
OQU88300	Sorghum	cytosol	86.41	84.23
TraesCS4B01G138900.1	Wheat	cytosol	85.44	84.08
TraesCS4D01G133600.1	Wheat	cytosol	85.11	83.76
CDY18400	Canola	cytosol	71.52	83.71
HORVU4Hr1G027040.2	Barley	cytosol, peroxisome	85.44	83.54
TraesCS4A01G178700.1	Wheat	cytosol	84.79	83.44
Os10t0100700-01	Rice	plasma membrane	84.47	83.39
Zm00001d007936_P001	Maize	cytosol	85.44	83.28
Zm00001d018633_P001	Maize	cytosol	85.11	82.97
GSMUA_AchrUn_...	Banana	cytosol	70.23	73.56
TraesCS2A01G268800.1	Wheat	plastid	87.06	69.69
Os11t0708500-01	Rice	plasma membrane	80.91	68.87
Zm00001d018632_P001	Maize	extracellular	85.76	64.16
CDY20176	Canola	cytosol	59.87	60.86
Os10t0191600-00	Rice	plasma membrane	30.42	50.81
GSMUA_Achr1P27650_001	Banana	cytosol	13.59	50.6
CDY50623	Canola	plastid	62.14	47.64
CDY69119	Canola	mitochondrion	11.65	19.67

Protein Annotations

KEGG:00750+4.3.3.6	Gene3D:3.20.20.70	MapMan:7.7.1.1	GO:A0A078FDX8	UniProt:A0A078FDX8	InterPro:Aldolase_TIM
EnsemblPlants:CDY11202	ProteinID:CDY11202	ProteinID:CDY11202.1	GO:GO:0003674	GO:GO:0003824	GO:GO:0008150
GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	GO:GO:0042819	GO:GO:0042823	EnsemblPlantsGene:GSBRNA2T00049220001
InterPro:IPR001852	InterPro:IPR013785	HAMAP:MF_01824	PFAM:PF01680	PIRSF:PIRSF029271	ScanProsite:PS01235
PFscan:PS51129	PANTHER:PTHR31829	MetaCyc:PWY-6466	InterPro:PdxS/SNZ	InterPro:PdxS/SNZ_N	InterPro:RibuloseP-bd_barrel
SUPFAM:SSF51366	TIGRFAMs:TIGR00343	UniPathway:UPA00245	UniParc:UPI000253FA27	SEG:seg	:

Description

BnaA03g00380DBnaA03g00380D protein [Source:UniProtKB/TrEMBL;Acc:A0A078FDX8]

Coordinates

chrLK032010:+:134303..135591

Molecular Weight (calculated)

33186.3 Da

IEP (calculated)

5.739

GRAVY (calculated)

0.050

Length

309 amino acids

Sequence
(BLAST)

001: MEGSSVVAVY GNGAITEAKK SPFSVKVGLA QMLRGGVIMD VVNAEQARIA EEAGACAVMA LERVPADIRA QGGVARMSDP QMIKDIKQAV TIPVMAKARI
101: GHFVEAQILE AIGIDYIDES EVLTLADEDN HINKHNFRIP FVCGCRNLGE ALRRIREGAA MIRTKGEAGT GNIVEAVRHV RSVMGDIRVL RNMDDDEVFT
201: FAKKLAAPYD LVMQTKQLGR LPVVQFAAGG VATPADAALM MQLGCDGVFV GSGIFKSGDP ARRARAIVQA VTHYSDPEML VEVSCGLGEA MVGINLNDDK
301: VERFANRSE

Best Arabidopsis Sequence Match ( AT5G01410.2 )
(BLAST)

001: MEGTGVVAVY GNGAITEAKK SPFSVKVGLA QMLRGGVIMD VVNAEQARIA EEAGACAVMA LERVPADIRA QGGVARMSDP QMIKEIKQAV TIPVMAKARI
101: GHFVEAQILE AIGIDYIDES EVLTLADEDH HINKHNFRIP FVCGCRNLGE ALRRIREGAA MIRTKGEAGT GNIIEAVRHV RSVNGDIRVL RNMDDDEVFT
201: FAKKLAAPYD LVMQTKQLGR LPVVQFAAGG VATPADAALM MQLGCDGVFV GSGIFKSGDP ARRARAIVQA VTHYSDPEML VEVSCGLGEA MVGINLNDEK
301: VERFANRSE

Arabidopsis Description

PDX13RSR4 [Source:UniProtKB/TrEMBL;Acc:A0A178UIV6]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.