CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 1
plastid 1
vacuole 1
peroxisome 1
cytosol 3
mitochondrion 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
KXG29380
OQU88300

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT2G38230.1	OQU88300	AT5G01410.1	16766694
AT2G38230.1	KXG29380	AT5G60540.1	16766694
AT5G01410.1	OQU88300	AT2G38230.1	16766694
AT5G01410.1	OQU88300	AT5G01410.1	16766694
AT5G01410.1	OQU88300	AT5G01410.1	21798944
AT5G01410.1	KXG29380	AT5G60540.1	16766694

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d007936_P001	Maize	cytosol	97.16	97.16
Zm00001d018633_P001	Maize	cytosol	96.53	96.53
Os07t0100200-01	Rice	plasma membrane	92.43	92.14
GSMUA_Achr1P25530_001	Banana	cytosol	73.82	91.41
GSMUA_Achr8P31880_001	Banana	cytosol	79.81	91.34
GSMUA_AchrUn_...	Banana	cytosol	73.19	90.62
TraesCS4A01G178700.1	Wheat	cytosol	88.96	89.81
HORVU2Hr1G065120.1	Barley	cytosol	89.27	89.56
TraesCS4D01G133600.1	Wheat	cytosol	88.64	89.49
Os10t0100700-01	Rice	plasma membrane	88.33	89.46
TraesCS2D01G267800.1	Wheat	cytosol	88.96	89.24
TraesCS4B01G138900.1	Wheat	cytosol	88.33	89.17
TraesCS2B01G287600.1	Wheat	cytosol	88.64	88.92
HORVU4Hr1G027040.2	Barley	cytosol, peroxisome	88.01	88.29
KRH11075	Soybean	endoplasmic reticulum, nucleus	85.8	87.46
KRH21198	Soybean	endoplasmic reticulum	85.49	87.14
Bra005687.1-P	Field mustard	cytosol	84.23	86.41
Bra028901.1-P	Field mustard	cytosol	84.23	86.41
CDY11202	Canola	cytosol	84.23	86.41
CDY04839	Canola	cytosol	84.23	86.41
PGSC0003DMT400078045	Potato	cytosol	84.23	86.41
CDX80774	Canola	cytosol	83.91	86.08
Solyc06g081980.1.1	Tomato	extracellular, nucleus, plastid, unclear	83.91	86.08
AT5G01410.1	Thale cress	cytosol	83.6	85.76
CDX93320	Canola	cytosol	75.39	82.7
AT2G38230.1	Thale cress	cytosol	79.81	81.88
VIT_06s0004g06640.t01	Wine grape	cytosol	83.6	78.64
CDY18400	Canola	cytosol	64.35	77.27
AT2G38210.1	Thale cress	cytosol, peroxisome, plastid	18.93	75.95
GSMUA_AchrUn_...	Banana	cytosol	70.66	75.93
Zm00001d018632_P001	Maize	extracellular	97.79	75.06
Os11t0708500-01	Rice	plasma membrane	84.54	73.83
TraesCS2A01G268800.1	Wheat	plastid	88.96	73.06
GSMUA_Achr1P27650_001	Banana	cytosol	14.83	56.63
Os10t0191600-00	Rice	plasma membrane	30.28	51.89

Protein Annotations

KEGG:00750+4.3.3.6	Gene3D:3.20.20.70	MapMan:7.7.1.1	EntrezGene:8081595	UniProt:A0A1W0W1P7	InterPro:Aldolase_TIM
GO:GO:0003674	GO:GO:0003824	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987
GO:GO:0042819	GO:GO:0042823	InterPro:IPR001852	InterPro:IPR013785	HAMAP:MF_01824	EnsemblPlants:OQU88300
ProteinID:OQU88300	ProteinID:OQU88300.1	PFAM:PF01680	PIRSF:PIRSF029271	ScanProsite:PS01235	PFscan:PS51129
PANTHER:PTHR31829	MetaCyc:PWY-6466	InterPro:PdxS/SNZ	InterPro:PdxS/SNZ_N	InterPro:RibuloseP-bd_barrel	EnsemblPlantsGene:SORBI_3002G005600
SUPFAM:SSF51366	TIGRFAMs:TIGR00343	UniParc:UPI0001A83411	RefSeq:XP_002459215.1	SEG:seg	:

Description

hypothetical protein

Coordinates

chr2:+:574407..577863

Molecular Weight (calculated)

33623.7 Da

IEP (calculated)

6.790

GRAVY (calculated)

0.031

Length

317 amino acids

Sequence
(BLAST)

001: MASDGSGVVT VYGNNGAALL EPSKQPKSAT FSVKVGLAQM LRGGVIMDVV TPEQARIAEE AGACAVMALE RVPADIRSQG GVARMSDPGL IRDIKRAVTI
101: PVMAKARIGH FVEAQILEAV GVDYVDESEV LTPADDAHHI NKHNFRVPFV CGCRDLGEAL RRVREGAAMI RTKGEAGTGN IVEAVRHVRS VMGDVRALRN
201: MDDDEVFAYA KRIAAPYDLV MQTKQLGRLP VVQFAAGGVA TPADAALMMQ LGCDGVFVGS GIFKSGDPAR RARAIVQAVT HYSDPTILAD VSAGLGEAMV
301: GINLNDPKVE RYAARSE

Best Arabidopsis Sequence Match ( AT5G01410.2 )
(BLAST)

001: MEGTGVVAVY GNGAITEAKK SPFSVKVGLA QMLRGGVIMD VVNAEQARIA EEAGACAVMA LERVPADIRA QGGVARMSDP QMIKEIKQAV TIPVMAKARI
101: GHFVEAQILE AIGIDYIDES EVLTLADEDH HINKHNFRIP FVCGCRNLGE ALRRIREGAA MIRTKGEAGT GNIIEAVRHV RSVNGDIRVL RNMDDDEVFT
201: FAKKLAAPYD LVMQTKQLGR LPVVQFAAGG VATPADAALM MQLGCDGVFV GSGIFKSGDP ARRARAIVQA VTHYSDPEML VEVSCGLGEA MVGINLNDEK
301: VERFANRSE

Arabidopsis Description

PDX13RSR4 [Source:UniProtKB/TrEMBL;Acc:A0A178UIV6]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.