Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- plastid 1
- peroxisome 1
- mitochondrion 1
- cytosol 2
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
| locusB | locations |
|---|---|
| Zm00001d007936_P001 | |
| Zm00001d018632_P001 | |
| Zm00001d018633_P001 | |
| Zm00001d053981_P002 |
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| OQU88300 | Sorghum | cytosol | 97.16 | 97.16 |
| Zm00001d018633_P001 | Maize | cytosol | 95.9 | 95.9 |
| Os07t0100200-01 | Rice | plasma membrane | 91.17 | 90.88 |
| GSMUA_Achr8P31880_001 | Banana | cytosol | 78.86 | 90.25 |
| GSMUA_Achr1P25530_001 | Banana | cytosol | 72.87 | 90.23 |
| TraesCS4A01G178700.1 | Wheat | cytosol | 88.64 | 89.49 |
| GSMUA_AchrUn_... | Banana | cytosol | 72.24 | 89.45 |
| HORVU2Hr1G065120.1 | Barley | cytosol | 88.96 | 89.24 |
| TraesCS4D01G133600.1 | Wheat | cytosol | 88.33 | 89.17 |
| TraesCS2D01G267800.1 | Wheat | cytosol | 88.64 | 88.92 |
| TraesCS4B01G138900.1 | Wheat | cytosol | 88.01 | 88.85 |
| Os10t0100700-01 | Rice | plasma membrane | 87.7 | 88.82 |
| TraesCS2B01G287600.1 | Wheat | cytosol | 88.33 | 88.61 |
| HORVU4Hr1G027040.2 | Barley | cytosol, peroxisome | 88.01 | 88.29 |
| KRH11075 | Soybean | endoplasmic reticulum, nucleus | 84.54 | 86.17 |
| KRH21198 | Soybean | endoplasmic reticulum | 84.23 | 85.85 |
| Bra005687.1-P | Field mustard | cytosol | 83.28 | 85.44 |
| Bra028901.1-P | Field mustard | cytosol | 83.28 | 85.44 |
| CDY11202 | Canola | cytosol | 83.28 | 85.44 |
| CDY04839 | Canola | cytosol | 83.28 | 85.44 |
| AT5G01410.1 | Thale cress | cytosol | 82.97 | 85.11 |
| CDX80774 | Canola | cytosol | 82.97 | 85.11 |
| PGSC0003DMT400078045 | Potato | cytosol | 82.97 | 85.11 |
| Solyc06g081980.1.1 | Tomato | extracellular, nucleus, plastid, unclear | 82.65 | 84.79 |
| CDX93320 | Canola | cytosol | 76.03 | 83.39 |
| AT2G38230.1 | Thale cress | cytosol | 80.44 | 82.52 |
| VIT_06s0004g06640.t01 | Wine grape | cytosol | 82.65 | 77.74 |
| CDY18400 | Canola | cytosol | 64.67 | 77.65 |
| AT2G38210.1 | Thale cress | cytosol, peroxisome, plastid | 19.24 | 77.22 |
| GSMUA_AchrUn_... | Banana | cytosol | 69.72 | 74.92 |
| Zm00001d018632_P001 | Maize | extracellular | 97.16 | 74.58 |
| Os11t0708500-01 | Rice | plasma membrane | 84.23 | 73.55 |
| TraesCS2A01G268800.1 | Wheat | plastid | 88.64 | 72.8 |
| GSMUA_Achr1P27650_001 | Banana | cytosol | 15.14 | 57.83 |
| Os10t0191600-00 | Rice | plasma membrane | 30.28 | 51.89 |
Protein Annotations
| KEGG:00750+4.3.3.6 | EntrezGene:100280630 | Gene3D:3.20.20.70 | MapMan:7.7.1.1 | InterPro:Aldolase_TIM | UniProt:B6SJQ3 |
| EMBL:BT053861 | EMBL:EU952968 | GO:GO:0003674 | GO:GO:0003824 | GO:GO:0008150 | GO:GO:0008152 |
| GO:GO:0009058 | GO:GO:0009987 | GO:GO:0042819 | GO:GO:0042823 | InterPro:IPR001852 | InterPro:IPR013785 |
| HAMAP:MF_01824 | ProteinID:ONM27951.1 | PFAM:PF01680 | PIRSF:PIRSF029271 | ScanProsite:PS01235 | PFscan:PS51129 |
| PANTHER:PTHR31829 | InterPro:PdxS/SNZ | InterPro:PdxS/SNZ_N | InterPro:RibuloseP-bd_barrel | SUPFAM:SSF51366 | TIGRFAMs:TIGR00343 |
| UniParc:UPI0000E6487B | EnsemblPlantsGene:Zm00001d007936 | EnsemblPlants:Zm00001d007936_P001 | EnsemblPlants:Zm00001d007936_T001 | SEG:seg | : |
Description
Pyridoxal 5'-phosphate synthase-like subunit PDX1.2
Coordinates
chr2:+:243421943..243422896
Molecular Weight (calculated)
33488.5 Da
IEP (calculated)
7.116
GRAVY (calculated)
0.044
Length
317 amino acids
Sequence
(BLAST)
(BLAST)
001: MASDGSGVVT VYGNNGAALL EPPKQPKSST FSVKVGLAQM LRGGVIMDVV TPEQARLAEE AGACAVMALE RVPADIRAQG GVARMSDPGL IRDIKRAVTI
101: PVMAKARIGH FVEAQILEAV GVDYVDESEV LTPADDAHHI NKHNFRVPFV CGCRDLGEAL RRVREGAAMI RTKGEAGTGN VVEAVRHVRS VAGAVRALRG
201: MDDDEVFAYA KRIAAPYDLV MQTKQLGRLP VVQFAAGGVA TPADAALMMQ LGCDGVFVGS GIFKSGDPAR RARAIVQAVT HYSDPTILTD VSAGLGEAMV
301: GINLNDPKVE RYAARSE
101: PVMAKARIGH FVEAQILEAV GVDYVDESEV LTPADDAHHI NKHNFRVPFV CGCRDLGEAL RRVREGAAMI RTKGEAGTGN VVEAVRHVRS VAGAVRALRG
201: MDDDEVFAYA KRIAAPYDLV MQTKQLGRLP VVQFAAGGVA TPADAALMMQ LGCDGVFVGS GIFKSGDPAR RARAIVQAVT HYSDPTILTD VSAGLGEAMV
301: GINLNDPKVE RYAARSE
001: MEGTGVVAVY GNGAITEAKK SPFSVKVGLA QMLRGGVIMD VVNAEQARIA EEAGACAVMA LERVPADIRA QGGVARMSDP QMIKEIKQAV TIPVMAKARI
101: GHFVEAQILE AIGIDYIDES EVLTLADEDH HINKHNFRIP FVCGCRNLGE ALRRIREGAA MIRTKGEAGT GNIIEAVRHV RSVNGDIRVL RNMDDDEVFT
201: FAKKLAAPYD LVMQTKQLGR LPVVQFAAGG VATPADAALM MQLGCDGVFV GSGIFKSGDP ARRARAIVQA VTHYSDPEML VEVSCGLGEA MVGINLNDEK
301: VERFANRSE
101: GHFVEAQILE AIGIDYIDES EVLTLADEDH HINKHNFRIP FVCGCRNLGE ALRRIREGAA MIRTKGEAGT GNIIEAVRHV RSVNGDIRVL RNMDDDEVFT
201: FAKKLAAPYD LVMQTKQLGR LPVVQFAAGG VATPADAALM MQLGCDGVFV GSGIFKSGDP ARRARAIVQA VTHYSDPEML VEVSCGLGEA MVGINLNDEK
301: VERFANRSE
Arabidopsis Description
PDX13RSR4 [Source:UniProtKB/TrEMBL;Acc:A0A178UIV6]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.