Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 1
- vacuole 1
- peroxisome 1
- cytosol 3
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Bra028901.1-P | Field mustard | cytosol | 98.38 | 98.38 |
| CDY04839 | Canola | cytosol | 98.38 | 98.38 |
| CDX80774 | Canola | cytosol | 98.06 | 98.06 |
| Bra005687.1-P | Field mustard | cytosol | 97.73 | 97.73 |
| CDY11202 | Canola | cytosol | 97.73 | 97.73 |
| Solyc06g081980.1.1 | Tomato | extracellular, nucleus, plastid, unclear | 92.56 | 92.56 |
| PGSC0003DMT400078045 | Potato | cytosol | 92.23 | 92.23 |
| KRH21198 | Soybean | endoplasmic reticulum | 92.56 | 91.96 |
| KRH11075 | Soybean | endoplasmic reticulum, nucleus | 92.23 | 91.64 |
| AT2G38230.1 | Thale cress | cytosol | 88.67 | 88.67 |
| AT2G38210.1 | Thale cress | cytosol, peroxisome, plastid | 22.65 | 88.61 |
| GSMUA_Achr1P25530_001 | Banana | cytosol | 72.17 | 87.11 |
| GSMUA_Achr8P31880_001 | Banana | cytosol | 77.99 | 87.0 |
| GSMUA_AchrUn_... | Banana | cytosol | 71.2 | 85.94 |
| TraesCS2D01G267800.1 | Wheat | cytosol | 87.7 | 85.76 |
| TraesCS2B01G287600.1 | Wheat | cytosol | 87.7 | 85.76 |
| HORVU2Hr1G065120.1 | Barley | cytosol | 87.38 | 85.44 |
| VIT_06s0004g06640.t01 | Wine grape | cytosol | 92.23 | 84.57 |
| Os07t0100200-01 | Rice | plasma membrane | 86.73 | 84.28 |
| TraesCS4B01G138900.1 | Wheat | cytosol | 85.11 | 83.76 |
| OQU88300 | Sorghum | cytosol | 85.76 | 83.6 |
| TraesCS4D01G133600.1 | Wheat | cytosol | 84.79 | 83.44 |
| HORVU4Hr1G027040.2 | Barley | cytosol, peroxisome | 85.11 | 83.23 |
| TraesCS4A01G178700.1 | Wheat | cytosol | 84.47 | 83.12 |
| Os10t0100700-01 | Rice | plasma membrane | 84.14 | 83.07 |
| Zm00001d007936_P001 | Maize | cytosol | 85.11 | 82.97 |
| Zm00001d018633_P001 | Maize | cytosol | 84.47 | 82.33 |
| GSMUA_AchrUn_... | Banana | cytosol | 70.23 | 73.56 |
| TraesCS2A01G268800.1 | Wheat | plastid | 87.7 | 70.21 |
| Os11t0708500-01 | Rice | plasma membrane | 80.58 | 68.59 |
| Zm00001d018632_P001 | Maize | extracellular | 85.11 | 63.68 |
| AT3G16050.1 | Thale cress | cytosol | 61.16 | 60.19 |
| GSMUA_Achr1P27650_001 | Banana | cytosol | 13.59 | 50.6 |
| Os10t0191600-00 | Rice | plasma membrane | 30.1 | 50.27 |
Protein Annotations
| KEGG:00750+4.3.3.6 | Gene3D:3.20.20.70 | PDB:5K2Z | PDB:5K3V | PDB:5LNR | PDB:5LNS |
| PDB:5LNU | PDB:5LNV | PDB:5LNW | MapMan:7.7.1.1 | EntrezGene:831738 | UniProt:A0A178UIV6 |
| ProteinID:AED90340.1 | EMBL:AF428298 | EMBL:AF446352 | EMBL:AK227197 | ProteinID:ANM69812.1 | ArrayExpress:AT5G01410 |
| EnsemblPlantsGene:AT5G01410 | RefSeq:AT5G01410 | TAIR:AT5G01410 | RefSeq:AT5G01410-TAIR-G | EnsemblPlants:AT5G01410.1 | TAIR:AT5G01410.1 |
| EMBL:AY088650 | EMBL:AY097428 | EMBL:AY972813 | InterPro:Aldolase_TIM | ProteinID:CAB81924.1 | UniProt:F6M3L4 |
| GO:GO:0003674 | GO:GO:0003824 | GO:GO:0005488 | GO:GO:0005515 | GO:GO:0005575 | GO:GO:0005622 |
| GO:GO:0005623 | GO:GO:0005737 | GO:GO:0005829 | GO:GO:0005886 | GO:GO:0006520 | GO:GO:0006950 |
| GO:GO:0006979 | GO:GO:0006982 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009058 | GO:GO:0009628 |
| GO:GO:0009651 | GO:GO:0009987 | GO:GO:0010224 | GO:GO:0010335 | GO:GO:0012505 | GO:GO:0015994 |
| GO:GO:0016020 | GO:GO:0016829 | GO:GO:0036381 | GO:GO:0042538 | GO:GO:0042803 | GO:GO:0042819 |
| GO:GO:0042823 | GO:GO:0046982 | InterPro:IPR001852 | InterPro:IPR013785 | EMBL:JF714983 | HAMAP:MF_01824 |
| RefSeq:NP_001331465.1 | RefSeq:NP_195761.1 | ProteinID:OAO93649.1 | Symbol:PDX1 | PFAM:PF01680 | PIRSF:PIRSF029271 |
| PO:PO:0000013 | PO:PO:0000014 | PO:PO:0000037 | PO:PO:0000230 | PO:PO:0000293 | PO:PO:0001016 |
| PO:PO:0001017 | PO:PO:0001054 | PO:PO:0001078 | PO:PO:0001081 | PO:PO:0001185 | PO:PO:0004507 |
| PO:PO:0007064 | PO:PO:0007095 | PO:PO:0007098 | PO:PO:0007103 | PO:PO:0007115 | PO:PO:0007123 |
| PO:PO:0007611 | PO:PO:0007616 | PO:PO:0008019 | PO:PO:0009001 | PO:PO:0009005 | PO:PO:0009006 |
| PO:PO:0009009 | PO:PO:0009010 | PO:PO:0009025 | PO:PO:0009029 | PO:PO:0009030 | PO:PO:0009031 |
| PO:PO:0009032 | PO:PO:0009046 | PO:PO:0009047 | PO:PO:0009052 | PO:PO:0020030 | PO:PO:0020038 |
| PO:PO:0020100 | PO:PO:0020137 | PO:PO:0025022 | PO:PO:0025195 | PO:PO:0025281 | ScanProsite:PS01235 |
| PFscan:PS51129 | PANTHER:PTHR31829 | InterPro:PdxS/SNZ | InterPro:PdxS/SNZ_N | UniProt:Q8L940 | InterPro:RibuloseP-bd_barrel |
| SUPFAM:SSF51366 | TIGRFAMs:TIGR00343 | UniParc:UPI00000AA185 | SEG:seg | : | : |
Description
PDX13RSR4 [Source:UniProtKB/TrEMBL;Acc:A0A178UIV6]
Coordinates
chr5:-:171889..173663
Molecular Weight (calculated)
33218.4 Da
IEP (calculated)
5.990
GRAVY (calculated)
0.036
Length
309 amino acids
Sequence
(BLAST)
(BLAST)
001: MEGTGVVAVY GNGAITEAKK SPFSVKVGLA QMLRGGVIMD VVNAEQARIA EEAGACAVMA LERVPADIRA QGGVARMSDP QMIKEIKQAV TIPVMAKARI
101: GHFVEAQILE AIGIDYIDES EVLTLADEDH HINKHNFRIP FVCGCRNLGE ALRRIREGAA MIRTKGEAGT GNIIEAVRHV RSVNGDIRVL RNMDDDEVFT
201: FAKKLAAPYD LVMQTKQLGR LPVVQFAAGG VATPADAALM MQLGCDGVFV GSGIFKSGDP ARRARAIVQA VTHYSDPEML VEVSCGLGEA MVGINLNDEK
301: VERFANRSE
101: GHFVEAQILE AIGIDYIDES EVLTLADEDH HINKHNFRIP FVCGCRNLGE ALRRIREGAA MIRTKGEAGT GNIIEAVRHV RSVNGDIRVL RNMDDDEVFT
201: FAKKLAAPYD LVMQTKQLGR LPVVQFAAGG VATPADAALM MQLGCDGVFV GSGIFKSGDP ARRARAIVQA VTHYSDPEML VEVSCGLGEA MVGINLNDEK
301: VERFANRSE
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.