Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- mitochondrion 2
- peroxisome 1
- cytosol 2
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS4B01G138900.1 | Wheat | cytosol | 99.36 | 99.36 |
| HORVU4Hr1G027040.2 | Barley | cytosol, peroxisome | 98.73 | 98.1 |
| TraesCS4A01G178700.1 | Wheat | cytosol | 98.09 | 98.09 |
| Zm00001d018633_P001 | Maize | cytosol | 90.13 | 89.27 |
| OQU88300 | Sorghum | cytosol | 89.49 | 88.64 |
| Zm00001d007936_P001 | Maize | cytosol | 89.17 | 88.33 |
| TraesCS2D01G267800.1 | Wheat | cytosol | 87.9 | 87.34 |
| GSMUA_AchrUn_... | Banana | cytosol | 70.38 | 86.33 |
| GSMUA_Achr1P25530_001 | Banana | cytosol | 70.38 | 86.33 |
| GSMUA_Achr8P31880_001 | Banana | cytosol | 76.11 | 86.28 |
| Bra028901.1-P | Field mustard | cytosol | 84.08 | 85.44 |
| CDY04839 | Canola | cytosol | 84.08 | 85.44 |
| KRH11075 | Soybean | endoplasmic reticulum, nucleus | 84.39 | 85.21 |
| CDY11202 | Canola | cytosol | 83.76 | 85.11 |
| Bra005687.1-P | Field mustard | cytosol | 83.76 | 85.11 |
| CDX80774 | Canola | cytosol | 83.76 | 85.11 |
| KRH21198 | Soybean | endoplasmic reticulum | 84.08 | 84.89 |
| AT5G01410.1 | Thale cress | cytosol | 83.44 | 84.79 |
| PGSC0003DMT400078045 | Potato | cytosol | 83.44 | 84.79 |
| Solyc06g081980.1.1 | Tomato | extracellular, nucleus, plastid, unclear | 83.12 | 84.47 |
| CDX93320 | Canola | cytosol | 76.75 | 83.39 |
| AT2G38230.1 | Thale cress | cytosol | 81.53 | 82.85 |
| CDY18400 | Canola | cytosol | 66.56 | 79.17 |
| AT2G38210.1 | Thale cress | cytosol, peroxisome, plastid | 19.43 | 77.22 |
| VIT_06s0004g06640.t01 | Wine grape | cytosol | 82.8 | 77.15 |
| Os11t0708500-01 | Rice | plasma membrane | 87.26 | 75.48 |
| GSMUA_AchrUn_... | Banana | cytosol | 68.47 | 72.88 |
| Zm00001d018632_P001 | Maize | extracellular | 89.49 | 68.04 |
| GSMUA_Achr1P27650_001 | Banana | cytosol | 13.06 | 49.4 |
Protein Annotations
| KEGG:00750+4.3.3.6 | Gene3D:3.20.20.70 | MapMan:7.7.1.1 | InterPro:Aldolase_TIM | GO:GO:0003674 | GO:GO:0003824 |
| GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009058 | GO:GO:0009987 | GO:GO:0042819 | GO:GO:0042823 |
| InterPro:IPR001852 | InterPro:IPR013785 | HAMAP:MF_01824 | PFAM:PF01680 | PIRSF:PIRSF029271 | ScanProsite:PS01235 |
| PFscan:PS51129 | PANTHER:PTHR31829 | InterPro:PdxS/SNZ | InterPro:PdxS/SNZ_N | InterPro:RibuloseP-bd_barrel | SUPFAM:SSF51366 |
| TIGRFAMs:TIGR00343 | EnsemblPlantsGene:TraesCS4D01G133600 | EnsemblPlants:TraesCS4D01G133600.1 | TIGR:cd04727 | SEG:seg | : |
Description
No Description!
Coordinates
chr4D:-:120071370..120072314
Molecular Weight (calculated)
33234.3 Da
IEP (calculated)
6.790
GRAVY (calculated)
0.139
Length
314 amino acids
Sequence
(BLAST)
(BLAST)
001: MASDGVVALY GNNKAVVEPS AKPAAATFSV KVGLAQMLRG GVIMDVVTAE QARLAEEAGA CAVMALERVP ADIRAQGGVA RMSDPALIRD IKRAVTIPVM
101: AKARIGHFVE AQILEAIGVD YVDESEVLTL ADDAHHINKH NFRVPFVCGC RDLGEALRRI REGAAMIRTK GEAGTGNVVE AVRHVRSVMG AVRALRNMDE
201: DEVFSYAKQI AAPYDLVMQT KQLGRLPVVQ FAAGGVATPA DAALMMQLGC DGVFVGSGIF KSGDPARRAR AIVQAVTHYS DPEILANVSA GLGEAMVGIN
301: LSDPNVERFA ARSQ
101: AKARIGHFVE AQILEAIGVD YVDESEVLTL ADDAHHINKH NFRVPFVCGC RDLGEALRRI REGAAMIRTK GEAGTGNVVE AVRHVRSVMG AVRALRNMDE
201: DEVFSYAKQI AAPYDLVMQT KQLGRLPVVQ FAAGGVATPA DAALMMQLGC DGVFVGSGIF KSGDPARRAR AIVQAVTHYS DPEILANVSA GLGEAMVGIN
301: LSDPNVERFA ARSQ
001: MADQAMTDQD QGAVTLYSGT AITDAKKNHP FSVKVGLAQV LRGGAIVEVS SVNQAKLAES AGACSVIVSD PVRSRGGVRR MPDPVLIKEV KRAVSVPVMA
101: RARVGHFVEA QILESLAVDY IDESEIISVA DDDHFINKHN FRSPFICGCR DTGEALRRIR EGAAMIRIQG DLTATGNIAE TVKNVRSLMG EVRVLNNMDD
201: DEVFTFAKKI SAPYDLVAQT KQMGRVPVVQ FASGGITTPA DAALMMQLGC DGVFVGSEVF DGPDPFKKLR SIVQAVQHYN DPHVLAEMSS GLENAMESLN
301: VRGDRIQDFG QGSV
101: RARVGHFVEA QILESLAVDY IDESEIISVA DDDHFINKHN FRSPFICGCR DTGEALRRIR EGAAMIRIQG DLTATGNIAE TVKNVRSLMG EVRVLNNMDD
201: DEVFTFAKKI SAPYDLVAQT KQMGRVPVVQ FASGGITTPA DAALMMQLGC DGVFVGSEVF DGPDPFKKLR SIVQAVQHYN DPHVLAEMSS GLENAMESLN
301: VRGDRIQDFG QGSV
Arabidopsis Description
PDX12Pyridoxal 5'-phosphate synthase-like subunit PDX1.2 [Source:UniProtKB/Swiss-Prot;Acc:Q9ZNR6]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.