Factsheet for TraesCS4A01G013200.2

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

plastid 1
cytosol 2
extracellular 1
endoplasmic reticulum 1
vacuole 1
plasma membrane 1
golgi 1
nucleus 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, nucleus
iPSORT:	plastid
MultiLoc:	cytosol
PProwler:	secretory
WoLF PSORT:	nucleus
YLoc:	cytosol

PPI

Inferred distinct locusB in Crop

locusB	locations
TraesCS2A01G268800.1
TraesCS2B01G287600.1
TraesCS2D01G267800.1
TraesCS4A01G178700.1
TraesCS4B01G138900.1
TraesCS4D01G133600.1

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G60540.1	TraesCS2A01G268800.1	AT2G38230.1	16766694
AT5G60540.1	TraesCS2B01G287600.1	AT2G38230.1	16766694
AT5G60540.1	TraesCS2D01G267800.1	AT2G38230.1	16766694
AT5G60540.1	TraesCS4A01G178700.1	AT2G38230.1	16766694
AT5G60540.1	TraesCS4B01G138900.1	AT2G38230.1	16766694
AT5G60540.1	TraesCS4D01G133600.1	AT2G38230.1	16766694
AT5G60540.1	TraesCS2A01G268800.1	AT5G01410.1	16766694
AT5G60540.1	TraesCS2B01G287600.1	AT5G01410.1	16766694
AT5G60540.1	TraesCS2D01G267800.1	AT5G01410.1	16766694
AT5G60540.1	TraesCS4A01G178700.1	AT5G01410.1	16766694
AT5G60540.1	TraesCS4B01G138900.1	AT5G01410.1	16766694
AT5G60540.1	TraesCS4D01G133600.1	AT5G01410.1	16766694

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS4D01G289800.1	Wheat	plastid	71.89	71.13
Os02t0130100-01	Rice	cytosol	61.92	68.24
KXG29380	Sorghum	cytosol	61.21	67.45
Zm00001d053981_P002	Maize	cytosol	61.57	66.8
TraesCS6A01G084600.1	Wheat	cytosol	60.14	66.02
TraesCS4B01G291200.1	Wheat	cytosol	69.39	62.7
KRH75832	Soybean	cytosol	19.22	55.67
HORVU4Hr1G075840.3	Barley	mitochondrion	66.55	52.82
GSMUA_Achr7P07370_001	Banana	cytosol	46.62	51.78
KRH65766	Soybean	cytosol	44.13	48.82
KRH75883	Soybean	cytosol	44.48	48.45
VIT_06s0004g03000.t01	Wine grape	cytosol	43.42	48.41
CDX80159	Canola	cytosol	34.16	46.83
CDY31539	Canola	cytosol	40.93	45.63
Bra002473.1-P	Field mustard	cytosol	40.93	45.63
AT5G60540.1	Thale cress	cytosol	41.28	45.49
PGSC0003DMT400020828	Potato	cytosol	39.86	44.62
CDY09196	Canola	cytosol	36.65	44.59
Solyc11g069290.1.1	Tomato	plastid	39.5	44.22

Protein Annotations

KEGG:00220+3.5.1.2	KEGG:00250+3.5.1.2	KEGG:00471+3.5.1.2	KEGG:00750+4.3.3.6	Gene3D:3.40.50.880	MapMan:7.7.1.2
InterPro:Class_I_gatase-like	GO:GO:0003674	GO:GO:0003824	GO:GO:0004359	GO:GO:0008150	GO:GO:0008152
GO:GO:0009058	GO:GO:0009987	GO:GO:0016787	GO:GO:0042819	GO:GO:0042823	InterPro:IPR002161
InterPro:IPR029062	PFAM:PF01174	PFscan:PS51130	PANTHER:PTHR31559	InterPro:PdxT/SNO	SUPFAM:SSF52317
EnsemblPlantsGene:TraesCS4A01G013200	EnsemblPlants:TraesCS4A01G013200.2	SEG:seg	:	:	:

Description

No Description!

Coordinates

chr4A:-:7463008..7465642

Molecular Weight (calculated)

30073.7 Da

IEP (calculated)

7.058

GRAVY (calculated)

-0.231

Length

281 amino acids

Sequence
(BLAST)

001: MAVVGVLALQ GSYNEHMSGT PNLLLAFLAR AGDVFSRDSV GFCLGSAEED RGEGGGGAQA GAAAGPRLAH HPRRREHHHG QARQLPQPVS CTSRVCRCRK
101: ACVGNLCWAH FPCKQGGQKL GGQELVGGLD CTVHRNFFGS QLQSFETELS VPMLADKEGG SNTCRGVFIR APAILEVGSD VEILAECPVP SGRPSITIPS
201: AEGVEEEVYS KDRVIVAVRQ GSILATAFHP ELTSDCRWHR FFLDMDKESH PKAFSALSLS SSSRGSEGGS KTKPFDLPIF E

Best Arabidopsis Sequence Match ( AT5G60540.1 )
(BLAST)

001: MTVGVLALQG SFNEHIAALR RLGVQGVEIR KADQLLTVSS LIIPGGESTT MAKLAEYHNL FPALREFVKM GKPVWGTCAG LIFLADRAVG QKEGGQELVG
101: GLDCTVHRNF FGSQIQSFEA DILVPQLTSQ EGGPETYRGV FIRAPAVLDV GPDVEVLADY PVPSNKVLYS SSTVQIQEED ALPETKVIVA VKQGNLLATA
201: FHPELTADTR WHSYFIKMTK EIEQGASSSS SKTIVSVGET SAGPEPAKPD LPIFQ

Arabidopsis Description

PDX2PDX2 [Source:UniProtKB/TrEMBL;Acc:A0A178UA48]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.