Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 1
- plastid 1
- cytosol 3
- mitochondrion 2
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY31539 | Canola | cytosol | 92.16 | 93.25 |
| Bra002473.1-P | Field mustard | cytosol | 92.16 | 93.25 |
| CDX80159 | Canola | cytosol | 72.94 | 90.73 |
| CDY09196 | Canola | cytosol | 79.22 | 87.45 |
| VIT_06s0004g03000.t01 | Wine grape | cytosol | 74.9 | 75.79 |
| KRH65766 | Soybean | cytosol | 72.16 | 72.44 |
| KRH75883 | Soybean | cytosol | 72.55 | 71.71 |
| Solyc11g069290.1.1 | Tomato | plastid | 68.24 | 69.32 |
| PGSC0003DMT400020828 | Potato | cytosol | 68.24 | 69.32 |
| KXG29380 | Sorghum | cytosol | 65.49 | 65.49 |
| GSMUA_Achr7P07370_001 | Banana | cytosol | 63.92 | 64.43 |
| Os02t0130100-01 | Rice | cytosol | 64.31 | 64.31 |
| Zm00001d053981_P002 | Maize | cytosol | 65.1 | 64.09 |
| TraesCSU01G113600.1 | Wheat | cytosol, mitochondrion | 63.92 | 63.67 |
| HORVU6Hr1G015450.1 | Barley | cytosol, mitochondrion | 63.53 | 63.28 |
| TraesCS6A01G084600.1 | Wheat | cytosol | 63.53 | 63.28 |
| TraesCS6B01G117600.1 | Wheat | cytosol | 63.53 | 63.28 |
| KRH75832 | Soybean | cytosol | 23.92 | 62.89 |
| TraesCS4D01G289800.1 | Wheat | plastid | 63.14 | 56.69 |
| TraesCS4B01G291200.1 | Wheat | cytosol | 62.75 | 51.45 |
| HORVU4Hr1G075840.3 | Barley | mitochondrion | 63.14 | 45.48 |
| TraesCS4A01G013200.2 | Wheat | cytosol | 45.49 | 41.28 |
Protein Annotations
| KEGG:00220+3.5.1.2 | KEGG:00250+3.5.1.2 | KEGG:00471+3.5.1.2 | KEGG:00750+4.3.3.6 | Gene3D:3.40.50.880 | MapMan:7.7.1.2 |
| EntrezGene:836175 | UniProt:A0A178UA48 | ProteinID:AED97341.1 | EMBL:AK117313 | EMBL:AK220914 | ArrayExpress:AT5G60540 |
| EnsemblPlantsGene:AT5G60540 | RefSeq:AT5G60540 | TAIR:AT5G60540 | RefSeq:AT5G60540-TAIR-G | EnsemblPlants:AT5G60540.1 | TAIR:AT5G60540.1 |
| EMBL:AY087902 | ProteinID:BAB08237.1 | EMBL:BT005266 | MEROPS:C26.A32 | InterPro:Class_I_gatase-like | Symbol:EMB2407 |
| GO:GO:0003674 | GO:GO:0003824 | GO:GO:0004359 | GO:GO:0005488 | GO:GO:0005515 | GO:GO:0005575 |
| GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005737 | GO:GO:0005829 | GO:GO:0006541 | GO:GO:0008150 |
| GO:GO:0008152 | GO:GO:0008614 | GO:GO:0009058 | GO:GO:0009987 | GO:GO:0016787 | GO:GO:0016829 |
| GO:GO:0036381 | GO:GO:0042819 | GO:GO:0042823 | GO:GO:0046982 | GO:GO:1903600 | InterPro:IPR002161 |
| InterPro:IPR029062 | HAMAP:MF_01615 | RefSeq:NP_568922.1 | ProteinID:OAO90037.1 | PFAM:PF01174 | PIRSF:PIRSF005639 |
| PO:PO:0000013 | PO:PO:0000014 | PO:PO:0000037 | PO:PO:0000230 | PO:PO:0000293 | PO:PO:0001054 |
| PO:PO:0001078 | PO:PO:0001081 | PO:PO:0001185 | PO:PO:0004507 | PO:PO:0007064 | PO:PO:0007095 |
| PO:PO:0007098 | PO:PO:0007103 | PO:PO:0007115 | PO:PO:0007123 | PO:PO:0007611 | PO:PO:0007616 |
| PO:PO:0008019 | PO:PO:0009001 | PO:PO:0009005 | PO:PO:0009006 | PO:PO:0009009 | PO:PO:0009010 |
| PO:PO:0009025 | PO:PO:0009029 | PO:PO:0009030 | PO:PO:0009031 | PO:PO:0009032 | PO:PO:0009046 |
| PO:PO:0009047 | PO:PO:0009052 | PO:PO:0020030 | PO:PO:0020038 | PO:PO:0020100 | PO:PO:0020137 |
| PO:PO:0025022 | PO:PO:0025281 | ScanProsite:PS01236 | PFscan:PS51130 | PANTHER:PTHR31559 | InterPro:PdxT/SNO |
| InterPro:PdxT/SNO_CS | UniProt:Q8LAD0 | SUPFAM:SSF52317 | TIGRFAMs:TIGR03800 | UniParc:UPI000000C5B7 | SEG:seg |
Description
PDX2PDX2 [Source:UniProtKB/TrEMBL;Acc:A0A178UA48]
Coordinates
chr5:-:24336623..24338802
Molecular Weight (calculated)
27439.9 Da
IEP (calculated)
4.961
GRAVY (calculated)
-0.005
Length
255 amino acids
Sequence
(BLAST)
(BLAST)
001: MTVGVLALQG SFNEHIAALR RLGVQGVEIR KADQLLTVSS LIIPGGESTT MAKLAEYHNL FPALREFVKM GKPVWGTCAG LIFLADRAVG QKEGGQELVG
101: GLDCTVHRNF FGSQIQSFEA DILVPQLTSQ EGGPETYRGV FIRAPAVLDV GPDVEVLADY PVPSNKVLYS SSTVQIQEED ALPETKVIVA VKQGNLLATA
201: FHPELTADTR WHSYFIKMTK EIEQGASSSS SKTIVSVGET SAGPEPAKPD LPIFQ
101: GLDCTVHRNF FGSQIQSFEA DILVPQLTSQ EGGPETYRGV FIRAPAVLDV GPDVEVLADY PVPSNKVLYS SSTVQIQEED ALPETKVIVA VKQGNLLATA
201: FHPELTADTR WHSYFIKMTK EIEQGASSSS SKTIVSVGET SAGPEPAKPD LPIFQ
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.