CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

plastid 2
cytosol 4
mitochondrion 2

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
CDX80774
CDX93320
CDY04839
CDY11202
CDY18400

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G60540.1	CDX93320	AT2G38230.1	16766694
AT5G60540.1	CDY18400	AT2G38230.1	16766694
AT5G60540.1	CDX80774	AT5G01410.1	16766694
AT5G60540.1	CDY04839	AT5G01410.1	16766694
AT5G60540.1	CDY11202	AT5G01410.1	16766694

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Bra002473.1-P	Field mustard	cytosol	100.0	100.0
CDX80159	Canola	cytosol	78.57	96.59
AT5G60540.1	Thale cress	cytosol	93.25	92.16
CDY09196	Canola	cytosol	82.94	90.48
VIT_06s0004g03000.t01	Wine grape	cytosol	75.79	75.79
KRH65766	Soybean	cytosol	72.62	72.05
KRH75883	Soybean	cytosol	72.22	70.54
Solyc11g069290.1.1	Tomato	plastid	67.46	67.73
PGSC0003DMT400020828	Potato	cytosol	67.46	67.73
GSMUA_Achr7P07370_001	Banana	cytosol	65.08	64.82
KXG29380	Sorghum	cytosol	65.08	64.31
Os02t0130100-01	Rice	cytosol	63.89	63.14
Zm00001d053981_P002	Maize	cytosol	64.68	62.93
KRH75832	Soybean	cytosol	24.21	62.89
TraesCS6B01G117600.1	Wheat	cytosol	63.49	62.5
TraesCSU01G113600.1	Wheat	cytosol, mitochondrion	63.49	62.5
HORVU6Hr1G015450.1	Barley	cytosol, mitochondrion	63.1	62.11
TraesCS6A01G084600.1	Wheat	cytosol	63.1	62.11
TraesCS4D01G289800.1	Wheat	plastid	63.1	55.99
TraesCS4B01G291200.1	Wheat	cytosol	62.7	50.8
HORVU4Hr1G075840.3	Barley	mitochondrion	63.1	44.92
TraesCS4A01G013200.2	Wheat	cytosol	45.63	40.93

Protein Annotations

KEGG:00220+3.5.1.2	KEGG:00250+3.5.1.2	KEGG:00471+3.5.1.2	KEGG:00750+4.3.3.6	Gene3D:3.40.50.880	MapMan:7.7.1.2
GO:A0A078H2C0	UniProt:A0A078H2C0	EnsemblPlants:CDY31539	ProteinID:CDY31539	ProteinID:CDY31539.1	InterPro:Class_I_gatase-like
GO:GO:0003674	GO:GO:0003824	GO:GO:0004359	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058
GO:GO:0009987	GO:GO:0016787	GO:GO:0042819	GO:GO:0042823	EnsemblPlantsGene:GSBRNA2T00047855001	InterPro:IPR002161
InterPro:IPR029062	HAMAP:MF_01615	PFAM:PF01174	PIRSF:PIRSF005639	ScanProsite:PS01236	PFscan:PS51130
PANTHER:PTHR31559	MetaCyc:PWY-6466	InterPro:PdxT/SNO	InterPro:PdxT/SNO_CS	SUPFAM:SSF52317	TIGRFAMs:TIGR03800
UniPathway:UPA00245	UniParc:UPI00025440DC	SEG:seg	:	:	:

Description

BnaA10g13320DBnaA10g13320D protein [Source:UniProtKB/TrEMBL;Acc:A0A078H2C0]

Coordinates

chrLK032274:+:154767..156745

Molecular Weight (calculated)

27244.6 Da

IEP (calculated)

5.339

GRAVY (calculated)

-0.016

Length

252 amino acids

Sequence
(BLAST)

001: MTVGVLALQG SFNEHIAALR RLGVQGIEIR KAEQLLTVSS LIIPGGESTT MAKLAEYHNL FPALREFVKT GKPVWGTCAG LIFLADRAVG QKEGGQELVG
101: GLDCTVHRNF FGSQIQSFEA DISVPILTSK EGGPETFRGV FIRAPAVLDV GPDVEVLAHY PVPSNKVLYS SSTVQIQEED ALPETNVIVA VKQRNLLATA
201: FHPELTADTR WHSYFMKMAK EMEQGASSSS SGTIVSVGET SEQAKPDIPI YQ

Best Arabidopsis Sequence Match ( AT5G60540.1 )
(BLAST)

001: MTVGVLALQG SFNEHIAALR RLGVQGVEIR KADQLLTVSS LIIPGGESTT MAKLAEYHNL FPALREFVKM GKPVWGTCAG LIFLADRAVG QKEGGQELVG
101: GLDCTVHRNF FGSQIQSFEA DILVPQLTSQ EGGPETYRGV FIRAPAVLDV GPDVEVLADY PVPSNKVLYS SSTVQIQEED ALPETKVIVA VKQGNLLATA
201: FHPELTADTR WHSYFIKMTK EIEQGASSSS SKTIVSVGET SAGPEPAKPD LPIFQ

Arabidopsis Description

PDX2PDX2 [Source:UniProtKB/TrEMBL;Acc:A0A178UA48]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.