CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 1
cytosol 3
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

Inferred distinct locusB in Crop

locusB	locations
CDX80774
CDX93320
CDY04839
CDY11202
CDY18400

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G60540.1	CDX93320	AT2G38230.1	16766694
AT5G60540.1	CDY18400	AT2G38230.1	16766694
AT5G60540.1	CDX80774	AT5G01410.1	16766694
AT5G60540.1	CDY04839	AT5G01410.1	16766694
AT5G60540.1	CDY11202	AT5G01410.1	16766694

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY09196	Canola	cytosol	93.66	83.12
Bra002473.1-P	Field mustard	cytosol	96.59	78.57
CDY31539	Canola	cytosol	96.59	78.57
AT5G60540.1	Thale cress	cytosol	90.73	72.94
KRH75832	Soybean	cytosol	29.27	61.86
VIT_06s0004g03000.t01	Wine grape	cytosol	71.71	58.33
KRH65766	Soybean	cytosol	66.83	53.94
KRH75883	Soybean	cytosol	66.83	53.1
Solyc11g069290.1.1	Tomato	plastid	62.44	51.0
PGSC0003DMT400020828	Potato	cytosol	62.44	51.0
KXG29380	Sorghum	cytosol	60.98	49.02
Os02t0130100-01	Rice	cytosol	60.49	48.63
TraesCS6B01G117600.1	Wheat	cytosol	60.49	48.44
TraesCSU01G113600.1	Wheat	cytosol, mitochondrion	60.49	48.44
Zm00001d053981_P002	Maize	cytosol	60.98	48.26
GSMUA_Achr7P07370_001	Banana	cytosol	59.51	48.22
HORVU6Hr1G015450.1	Barley	cytosol, mitochondrion	60.0	48.05
TraesCS6A01G084600.1	Wheat	cytosol	60.0	48.05
TraesCS4D01G289800.1	Wheat	plastid	60.49	43.66
TraesCS4B01G291200.1	Wheat	cytosol	60.0	39.55
HORVU4Hr1G075840.3	Barley	mitochondrion	60.0	34.75
TraesCS4A01G013200.2	Wheat	cytosol	46.83	34.16

Protein Annotations

KEGG:00220+3.5.1.2	KEGG:00250+3.5.1.2	KEGG:00471+3.5.1.2	KEGG:00750+4.3.3.6	Gene3D:3.40.50.880	MapMan:7.7.1.2
GO:A0A078CVW3	EnsemblPlants:CDX80159	ProteinID:CDX80159	ProteinID:CDX80159.1	InterPro:Class_I_gatase-like	GO:GO:0003674
GO:GO:0003824	GO:GO:0004359	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987
GO:GO:0016787	GO:GO:0042819	GO:GO:0042823	EnsemblPlantsGene:GSBRNA2T00133077001	InterPro:IPR002161	InterPro:IPR029062
PFAM:PF01174	PIRSF:PIRSF005639	PFscan:PS51130	PANTHER:PTHR31559	MetaCyc:PWY-6466	InterPro:PdxT/SNO
SUPFAM:SSF52317	UniPathway:UPA00245	UniParc:UPI0004EDF66E	SEG:seg	:	:

Description

BnaC09g35830D

Coordinates

chrLK031820:+:19492..21304

Molecular Weight (calculated)

22275.5 Da

IEP (calculated)

5.051

GRAVY (calculated)

-0.102

Length

205 amino acids

Sequence
(BLAST)

001: MAKLAEYHNL FPALREFVKT GKPVWGTCAG LIFLADRAVG QKEGGQELVG GLDCTVHRNF FGSQIQSFEA DISVPILTSK EGGPETYRGV FIRAPAVLDV
101: GPDVEVLAHY PVPSNKVLYS SSTVQIQEED ALLETNVIVA VKQRNLLATA FHPELTADTR WHSYFMKMAK EMEQGASSSS GGTIVSVGET SVGTEQTKPD
201: IPIYQ

Best Arabidopsis Sequence Match ( AT5G60540.1 )
(BLAST)

001: MTVGVLALQG SFNEHIAALR RLGVQGVEIR KADQLLTVSS LIIPGGESTT MAKLAEYHNL FPALREFVKM GKPVWGTCAG LIFLADRAVG QKEGGQELVG
101: GLDCTVHRNF FGSQIQSFEA DILVPQLTSQ EGGPETYRGV FIRAPAVLDV GPDVEVLADY PVPSNKVLYS SSTVQIQEED ALPETKVIVA VKQGNLLATA
201: FHPELTADTR WHSYFIKMTK EIEQGASSSS SKTIVSVGET SAGPEPAKPD LPIFQ

Arabidopsis Description

PDX2PDX2 [Source:UniProtKB/TrEMBL;Acc:A0A178UA48]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.