Factsheet for Solyc11g069290.1.1

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

nucleus 1
cytosol 5
extracellular 1
endoplasmic reticulum 1
vacuole 1
plasma membrane 1
golgi 1
plastid 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plastid
Any Predictor:	cytosol, nucleus, plastid, secretory
BaCelLo:	nucleus
EpiLoc:	cytosol
MultiLoc:	cytosol
Plant-mPloc:	cytosol
Predotar:	plastid
PProwler:	secretory
WoLF PSORT:	cytosol
YLoc:	cytosol

plastid: 22908117

msms PMID: 22908117 doi

C Barsan, M Zouine, E Maza, W Bian, I Egea, M Rossignol, D Bouyssie, C Pichereaux, E Purgatto, M Bouzayen, A Latché, JC Pech

Université de Toulouse, Institut National Polytechnique-Ecole Nationale Supérieure Agronomique de Toulouse, Génomique et Biotechnologie des Fruits, Castanet-Tolosan F-31326, France.

PPI

Inferred distinct locusB in Crop

locusB	locations
Solyc06g081980.1.1

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G60540.1	Solyc06g081980.1.1	AT2G38230.1	16766694
AT5G60540.1	Solyc06g081980.1.1	AT5G01410.1	16766694

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400020828	Potato	cytosol	96.81	96.81
VIT_06s0004g03000.t01	Wine grape	cytosol	71.31	71.03
AT5G60540.1	Thale cress	cytosol	69.32	68.24
KRH65766	Soybean	cytosol	68.53	67.72
Bra002473.1-P	Field mustard	cytosol	67.73	67.46
CDY31539	Canola	cytosol	67.73	67.46
KRH75883	Soybean	cytosol	68.92	67.05
GSMUA_Achr7P07370_001	Banana	cytosol	64.14	63.64
KXG29380	Sorghum	cytosol	64.14	63.14
HORVU6Hr1G015450.1	Barley	cytosol, mitochondrion	64.14	62.89
CDY09196	Canola	cytosol	57.77	62.77
CDX80159	Canola	cytosol	51.0	62.44
Os02t0130100-01	Rice	cytosol	63.35	62.35
TraesCS6A01G084600.1	Wheat	cytosol	63.35	62.11
Zm00001d053981_P002	Maize	cytosol	63.74	61.78
TraesCS6B01G117600.1	Wheat	cytosol	62.95	61.72
TraesCSU01G113600.1	Wheat	cytosol, mitochondrion	62.95	61.72
TraesCS4D01G289800.1	Wheat	plastid	62.15	54.93
KRH75832	Soybean	cytosol	21.12	54.64
TraesCS4B01G291200.1	Wheat	cytosol	62.55	50.48
HORVU4Hr1G075840.3	Barley	mitochondrion	62.55	44.35
TraesCS4A01G013200.2	Wheat	cytosol	44.22	39.5

Protein Annotations

KEGG:00220+3.5.1.2	KEGG:00250+3.5.1.2	KEGG:00471+3.5.1.2	KEGG:00750+4.3.3.6	Gene3D:3.40.50.880	MapMan:7.7.1.2
InterPro:Class_I_gatase-like	GO:GO:0003674	GO:GO:0003824	GO:GO:0004359	GO:GO:0005488	GO:GO:0005515
GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0005829	GO:GO:0008150
GO:GO:0008152	GO:GO:0008614	GO:GO:0009058	GO:GO:0009987	GO:GO:0016787	GO:GO:0042819
GO:GO:0042823	GO:GO:0046982	GO:GO:1903600	InterPro:IPR002161	InterPro:IPR029062	UniProt:K4DA85
HAMAP:MF_01615	PFAM:PF01174	PIRSF:PIRSF005639	ScanProsite:PS01236	PFscan:PS51130	PANTHER:PTHR31559
InterPro:PdxT/SNO	InterPro:PdxT/SNO_CS	SUPFAM:SSF52317	EnsemblPlantsGene:Solyc11g069290.1	EnsemblPlants:Solyc11g069290.1.1	TIGRFAMs:TIGR03800
UniParc:UPI000276A935	:	:	:	:	:

Description

Probable pyridoxal 5'-phosphate synthase subunit PDX2 [Source:Projected from Arabidopsis thaliana (AT5G60540) UniProtKB/Swiss-Prot;Acc:Q8LAD0]

Coordinates

chr11:-:53912281..53917824

Molecular Weight (calculated)

27027.6 Da

IEP (calculated)

5.657

GRAVY (calculated)

0.059

Length

251 amino acids

Sequence
(BLAST)

001: MVVGVLALQG SFNEHIAVLK RLGVKGVEVR KPEQLLNVSS LIIPGGESTT MAKLAELHNL FPALREFVQM GKPVWGTCAG LIFLANKATG QKTGGQKLIG
101: GLDCTVHRNF FGSQIQSFET ELPIPQVVAE DGGPPSFRAV FIRAPAILDV GPDVEVLSDI PLSAIETLNS NPAIQKEEES TESGKKVIVA VKQGNLLATA
201: FHPELTADTR WHSYFLKMVP EIEGGTSDIV STSTSNQSFG TRSIIDFPIY Q

Best Arabidopsis Sequence Match ( AT5G60540.1 )
(BLAST)

001: MTVGVLALQG SFNEHIAALR RLGVQGVEIR KADQLLTVSS LIIPGGESTT MAKLAEYHNL FPALREFVKM GKPVWGTCAG LIFLADRAVG QKEGGQELVG
101: GLDCTVHRNF FGSQIQSFEA DILVPQLTSQ EGGPETYRGV FIRAPAVLDV GPDVEVLADY PVPSNKVLYS SSTVQIQEED ALPETKVIVA VKQGNLLATA
201: FHPELTADTR WHSYFIKMTK EIEQGASSSS SKTIVSVGET SAGPEPAKPD LPIFQ

Arabidopsis Description

PDX2PDX2 [Source:UniProtKB/TrEMBL;Acc:A0A178UA48]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.