Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 1
- cytosol 5
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
| locusB | locations |
|---|---|
| VIT_06s0004g06640.t01 |
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT5G60540.1 | VIT_06s0004g06640.t01 | AT2G38230.1 | 16766694 |
| AT5G60540.1 | VIT_06s0004g06640.t01 | AT5G01410.1 | 16766694 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| KRH65766 | Soybean | cytosol | 77.78 | 77.17 |
| KRH75883 | Soybean | cytosol | 78.97 | 77.13 |
| Bra002473.1-P | Field mustard | cytosol | 75.79 | 75.79 |
| CDY31539 | Canola | cytosol | 75.79 | 75.79 |
| AT5G60540.1 | Thale cress | cytosol | 75.79 | 74.9 |
| PGSC0003DMT400020828 | Potato | cytosol | 71.43 | 71.71 |
| CDX80159 | Canola | cytosol | 58.33 | 71.71 |
| Solyc11g069290.1.1 | Tomato | plastid | 71.03 | 71.31 |
| CDY09196 | Canola | cytosol | 64.29 | 70.13 |
| KRH75832 | Soybean | cytosol | 26.59 | 69.07 |
| KXG29380 | Sorghum | cytosol | 69.44 | 68.63 |
| GSMUA_Achr7P07370_001 | Banana | cytosol | 68.65 | 68.38 |
| Zm00001d053981_P002 | Maize | cytosol | 69.44 | 67.57 |
| Os02t0130100-01 | Rice | cytosol | 68.25 | 67.45 |
| HORVU6Hr1G015450.1 | Barley | cytosol, mitochondrion | 68.25 | 67.19 |
| TraesCS6A01G084600.1 | Wheat | cytosol | 67.86 | 66.8 |
| TraesCS6B01G117600.1 | Wheat | cytosol | 67.86 | 66.8 |
| TraesCSU01G113600.1 | Wheat | cytosol, mitochondrion | 67.46 | 66.41 |
| TraesCS4D01G289800.1 | Wheat | plastid | 67.86 | 60.21 |
| TraesCS4B01G291200.1 | Wheat | cytosol | 68.25 | 55.31 |
| HORVU4Hr1G075840.3 | Barley | mitochondrion | 68.25 | 48.59 |
| TraesCS4A01G013200.2 | Wheat | cytosol | 48.41 | 43.42 |
Protein Annotations
| KEGG:00220+3.5.1.2 | KEGG:00250+3.5.1.2 | KEGG:00471+3.5.1.2 | KEGG:00750+4.3.3.6 | EntrezGene:100267348 | wikigene:100267348 |
| Gene3D:3.40.50.880 | MapMan:7.7.1.2 | MEROPS:C26.A32 | ProteinID:CCB43662 | ProteinID:CCB43662.1 | InterPro:Class_I_gatase-like |
| UniProt:F6GTZ8 | EMBL:FN594951 | GO:GO:0003674 | GO:GO:0003824 | GO:GO:0004359 | GO:GO:0005488 |
| GO:GO:0005515 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005737 | GO:GO:0005829 |
| GO:GO:0008150 | GO:GO:0008152 | GO:GO:0008614 | GO:GO:0009058 | GO:GO:0009987 | GO:GO:0016787 |
| GO:GO:0042819 | GO:GO:0042823 | GO:GO:0046982 | GO:GO:1903600 | InterPro:IPR002161 | InterPro:IPR029062 |
| EntrezGene:LOC100267348 | wikigene:LOC100267348 | HAMAP:MF_01615 | PFAM:PF01174 | PIRSF:PIRSF005639 | ScanProsite:PS01236 |
| PFscan:PS51130 | PANTHER:PTHR31559 | InterPro:PdxT/SNO | InterPro:PdxT/SNO_CS | SUPFAM:SSF52317 | TIGRFAMs:TIGR03800 |
| UniParc:UPI0001983769 | ArrayExpress:VIT_06s0004g03000 | EnsemblPlantsGene:VIT_06s0004g03000 | EnsemblPlants:VIT_06s0004g03000.t01 | unigene:Vvi.22350 | RefSeq:XP_002285095 |
| RefSeq:XP_002285095.1 | : | : | : | : | : |
Description
No Description!
Coordinates
chr6:+:3742324..3751960
Molecular Weight (calculated)
26880.2 Da
IEP (calculated)
5.153
GRAVY (calculated)
-0.050
Length
252 amino acids
Sequence
(BLAST)
(BLAST)
001: MAVGVLALQG SFNEHIAALR KLGVKGVEIR KPEQLEQVGS LIIPGGESTT MAKLAEYHNL FPALREFVKL GKPVWGTCAG LIFLANKAVG QKTGGQELVG
101: GLDCTVHRNF FGSQIQSFET QLSVPELAAK EGGPETFRGV FIRAPAILEV GPKVEVLADY PVPSGKLFDS ISALEAPQEN AGSEKKVIVA VKQGNLLGTA
201: FHPELTADTR WHSYFLKMTS EVGEEASSSI SVAGGEDTSS NEQLGNDLPI YQ
101: GLDCTVHRNF FGSQIQSFET QLSVPELAAK EGGPETFRGV FIRAPAILEV GPKVEVLADY PVPSGKLFDS ISALEAPQEN AGSEKKVIVA VKQGNLLGTA
201: FHPELTADTR WHSYFLKMTS EVGEEASSSI SVAGGEDTSS NEQLGNDLPI YQ
001: MTVGVLALQG SFNEHIAALR RLGVQGVEIR KADQLLTVSS LIIPGGESTT MAKLAEYHNL FPALREFVKM GKPVWGTCAG LIFLADRAVG QKEGGQELVG
101: GLDCTVHRNF FGSQIQSFEA DILVPQLTSQ EGGPETYRGV FIRAPAVLDV GPDVEVLADY PVPSNKVLYS SSTVQIQEED ALPETKVIVA VKQGNLLATA
201: FHPELTADTR WHSYFIKMTK EIEQGASSSS SKTIVSVGET SAGPEPAKPD LPIFQ
101: GLDCTVHRNF FGSQIQSFEA DILVPQLTSQ EGGPETYRGV FIRAPAVLDV GPDVEVLADY PVPSNKVLYS SSTVQIQEED ALPETKVIVA VKQGNLLATA
201: FHPELTADTR WHSYFIKMTK EIEQGASSSS SKTIVSVGET SAGPEPAKPD LPIFQ
Arabidopsis Description
PDX2PDX2 [Source:UniProtKB/TrEMBL;Acc:A0A178UA48]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.