CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

cytosol 5
mitochondrion 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion
BaCelLo:	cytosol
MultiLoc:	cytosol
Plant-mPloc:	cytosol
PProwler:	mitochondrion
TargetP:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

Inferred distinct locusB in Crop

locusB	locations
OQU88300

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G60540.1	OQU88300	AT2G38230.1	16766694
AT5G60540.1	OQU88300	AT5G01410.1	16766694

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d053981_P002	Maize	cytosol	96.47	94.98
Os02t0130100-01	Rice	cytosol	89.41	89.41
HORVU6Hr1G015450.1	Barley	cytosol, mitochondrion	87.84	87.5
TraesCSU01G113600.1	Wheat	cytosol, mitochondrion	87.45	87.11
TraesCS6A01G084600.1	Wheat	cytosol	87.45	87.11
TraesCS6B01G117600.1	Wheat	cytosol	87.06	86.72
TraesCS4D01G289800.1	Wheat	plastid	88.24	79.23
GSMUA_Achr7P07370_001	Banana	cytosol	72.16	72.73
TraesCS4B01G291200.1	Wheat	cytosol	88.63	72.67
VIT_06s0004g03000.t01	Wine grape	cytosol	68.63	69.44
KRH65766	Soybean	cytosol	67.45	67.72
KRH75883	Soybean	cytosol	67.84	67.05
AT5G60540.1	Thale cress	cytosol	65.49	65.49
Bra002473.1-P	Field mustard	cytosol	64.31	65.08
CDY31539	Canola	cytosol	64.31	65.08
PGSC0003DMT400020828	Potato	cytosol	63.14	64.14
Solyc11g069290.1.1	Tomato	plastid	63.14	64.14
HORVU4Hr1G075840.3	Barley	mitochondrion	88.24	63.56
CDY09196	Canola	cytosol	56.08	61.9
TraesCS4A01G013200.2	Wheat	cytosol	67.45	61.21
CDX80159	Canola	cytosol	49.02	60.98
KRH75832	Soybean	cytosol	22.35	58.76

Protein Annotations

KEGG:00220+3.5.1.2	KEGG:00250+3.5.1.2	KEGG:00471+3.5.1.2	KEGG:00750+4.3.3.6	Gene3D:3.40.50.880	MapMan:7.7.1.2
UniProt:A0A194YNG8	InterPro:Class_I_gatase-like	GO:GO:0003674	GO:GO:0003824	GO:GO:0004359	GO:GO:0005488
GO:GO:0005515	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0005829
GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	GO:GO:0016787	GO:GO:0042819
GO:GO:0042823	GO:GO:0046982	InterPro:IPR002161	InterPro:IPR029062	EnsemblPlants:KXG29380	ProteinID:KXG29380
ProteinID:KXG29380.1	HAMAP:MF_01615	PFAM:PF01174	PIRSF:PIRSF005639	ScanProsite:PS01236	PFscan:PS51130
PANTHER:PTHR31559	MetaCyc:PWY-6466	InterPro:PdxT/SNO	InterPro:PdxT/SNO_CS	EnsemblPlantsGene:SORBI_3004G028500	SUPFAM:SSF52317
TIGRFAMs:TIGR03800	UniParc:UPI000220727F	SEG:seg	:	:	:

Description

hypothetical protein

Coordinates

chr4:-:2271084..2274190

Molecular Weight (calculated)

27614.1 Da

IEP (calculated)

5.692

GRAVY (calculated)

-0.107

Length

255 amino acids

Sequence
(BLAST)

001: MAVVGVLALQ GSYNEHMAAL RRIGVRGVEV RKPEQLLGVD SLIIPGGEST TMAKLANYHN LFPALREFVG GGKPVWGTCA GLIFLANKAV GQKTGGQELV
101: GGLDCTVHRN FFGSQLQSFE TELSVPKLSE KEGGNNTCRG VFIRAPAILE VGPDVEILAD CPVPADRPSI TISFGEGTEE EVYSKDRVIV AVRQGNILAT
201: AFHPELTSDS RWHRFFLDMD KESQAKAFSA LSISSSSRDT ENLPKNKPLD LPIFE

Best Arabidopsis Sequence Match ( AT5G60540.1 )
(BLAST)

001: MTVGVLALQG SFNEHIAALR RLGVQGVEIR KADQLLTVSS LIIPGGESTT MAKLAEYHNL FPALREFVKM GKPVWGTCAG LIFLADRAVG QKEGGQELVG
101: GLDCTVHRNF FGSQIQSFEA DILVPQLTSQ EGGPETYRGV FIRAPAVLDV GPDVEVLADY PVPSNKVLYS SSTVQIQEED ALPETKVIVA VKQGNLLATA
201: FHPELTADTR WHSYFIKMTK EIEQGASSSS SKTIVSVGET SAGPEPAKPD LPIFQ

Arabidopsis Description

PDX2PDX2 [Source:UniProtKB/TrEMBL;Acc:A0A178UA48]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.