CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 2
cytosol 4
plastid 1
extracellular 2
endoplasmic reticulum 2
vacuole 2
plasma membrane 2
golgi 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, nucleus, plastid, secretory
BaCelLo:	nucleus
EpiLoc:	cytosol
iPSORT:	plastid
MultiLoc:	cytosol
Plant-mPloc:	cytosol
PProwler:	secretory
TargetP:	secretory
WoLF PSORT:	nucleus
YLoc:	cytosol

PPI

Inferred distinct locusB in Crop

locusB	locations
KRH11075
KRH21198

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G60540.1	KRH11075	AT2G38230.1	16766694
AT5G60540.1	KRH21198	AT2G38230.1	16766694
AT5G60540.1	KRH11075	AT5G01410.1	16766694
AT5G60540.1	KRH21198	AT5G01410.1	16766694

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH75883	Soybean	cytosol	95.67	94.19
KRH75832	Soybean	cytosol	32.28	84.54
VIT_06s0004g03000.t01	Wine grape	cytosol	77.17	77.78
Bra002473.1-P	Field mustard	cytosol	72.05	72.62
CDY31539	Canola	cytosol	72.05	72.62
AT5G60540.1	Thale cress	cytosol	72.44	72.16
Solyc11g069290.1.1	Tomato	plastid	67.72	68.53
PGSC0003DMT400020828	Potato	cytosol	67.72	68.53
KXG29380	Sorghum	cytosol	67.72	67.45
Zm00001d053981_P002	Maize	cytosol	68.5	67.18
Os02t0130100-01	Rice	cytosol	67.32	67.06
CDX80159	Canola	cytosol	53.94	66.83
CDY09196	Canola	cytosol	60.63	66.67
HORVU6Hr1G015450.1	Barley	cytosol, mitochondrion	66.14	65.62
TraesCS6A01G084600.1	Wheat	cytosol	66.14	65.62
TraesCS6B01G117600.1	Wheat	cytosol	66.14	65.62
TraesCSU01G113600.1	Wheat	cytosol, mitochondrion	65.75	65.23
GSMUA_Achr7P07370_001	Banana	cytosol	64.96	65.22
TraesCS4D01G289800.1	Wheat	plastid	67.32	60.21
TraesCS4B01G291200.1	Wheat	cytosol	67.32	54.98
HORVU4Hr1G075840.3	Barley	mitochondrion	66.93	48.02
TraesCS4A01G013200.2	Wheat	cytosol	48.82	44.13

Protein Annotations

KEGG:00220+3.5.1.2	KEGG:00250+3.5.1.2	KEGG:00471+3.5.1.2	KEGG:00750+4.3.3.6	EntrezGene:100776337	Gene3D:3.40.50.880
MapMan:7.7.1.2	EMBL:ACUP02001499	EMBL:BT095761	MEROPS:C26.A32	UniProt:C6TDU5	InterPro:Class_I_gatase-like
EnsemblPlantsGene:GLYMA_03G060100	GO:GO:0003674	GO:GO:0003824	GO:GO:0004359	GO:GO:0005575	GO:GO:0005622
GO:GO:0005623	GO:GO:0005737	GO:GO:0005829	GO:GO:0008150	GO:GO:0008152	GO:GO:0008614
GO:GO:0009058	GO:GO:0009987	GO:GO:0016787	GO:GO:0042819	GO:GO:0042823	GO:GO:1903600
InterPro:IPR002161	InterPro:IPR029062	EnsemblPlants:KRH65766	ProteinID:KRH65766	ProteinID:KRH65766.1	HAMAP:MF_01615
PFAM:PF01174	PIRSF:PIRSF005639	ScanProsite:PS01236	PFscan:PS51130	PANTHER:PTHR31559	MetaCyc:PWY-6466
InterPro:PdxT/SNO	InterPro:PdxT/SNO_CS	SUPFAM:SSF52317	TIGRFAMs:TIGR03800	UniParc:UPI0000DA6EAB	SEG:seg

Description

hypothetical protein

Coordinates

chr3:+:8744932..8749449

Molecular Weight (calculated)

27652.0 Da

IEP (calculated)

5.352

GRAVY (calculated)

-0.088

Length

254 amino acids

Sequence
(BLAST)

001: MAVVGVLALQ GSFNEHIAAL RRLGVQGVEI RKPEQLNTIS SLIIPGGEST TMAKLAEYHN LFPALREFVQ MGKPVWGTCA GLIFLANKAI GQKTGGQYLV
101: GGLDCTVHRN FFGSQIQSFE AELSVPELVS KEGGPETFCG IFIRAPAILE AGPEVQVLAD YPVPSSRLLS SDSSIEDQTE NAEKESKVIV AVRQGNILAT
201: AFHPELTADT RWHSYFVKMS NEIREEASSS SLVPAQVSST SQYQQPRNDL PIYR

Best Arabidopsis Sequence Match ( AT5G60540.1 )
(BLAST)

001: MTVGVLALQG SFNEHIAALR RLGVQGVEIR KADQLLTVSS LIIPGGESTT MAKLAEYHNL FPALREFVKM GKPVWGTCAG LIFLADRAVG QKEGGQELVG
101: GLDCTVHRNF FGSQIQSFEA DILVPQLTSQ EGGPETYRGV FIRAPAVLDV GPDVEVLADY PVPSNKVLYS SSTVQIQEED ALPETKVIVA VKQGNLLATA
201: FHPELTADTR WHSYFIKMTK EIEQGASSSS SKTIVSVGET SAGPEPAKPD LPIFQ

Arabidopsis Description

PDX2PDX2 [Source:UniProtKB/TrEMBL;Acc:A0A178UA48]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.