Factsheet for GSMUA_AchrUn_randomP00210_001

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

cytosol 4
vacuole 1
plastid 1
peroxisome 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
GSMUA_Achr1P25530_001
GSMUA_Achr1P27650_001
GSMUA_Achr7P07370_001
GSMUA_Achr8P31880_001
GSMUA_AchrUn_...
GSMUA_AchrUn_...

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT2G38230.1	GSMUA_Achr1P25530_001	AT5G01410.1	16766694
AT2G38230.1	GSMUA_Achr1P27650_001	AT5G01410.1	16766694
AT2G38230.1	GSMUA_Achr8P31880_001	AT5G01410.1	16766694
AT2G38230.1	GSMUA_AchrUn_...	AT5G01410.1	16766694
AT2G38230.1	GSMUA_AchrUn_...	AT5G01410.1	16766694
AT2G38230.1	GSMUA_Achr7P07370_001	AT5G60540.1	16766694
AT5G01410.1	GSMUA_Achr1P25530_001	AT2G38230.1	16766694
AT5G01410.1	GSMUA_Achr1P27650_001	AT2G38230.1	16766694
AT5G01410.1	GSMUA_Achr8P31880_001	AT2G38230.1	16766694
AT5G01410.1	GSMUA_AchrUn_...	AT2G38230.1	16766694
AT5G01410.1	GSMUA_AchrUn_...	AT2G38230.1	16766694
AT5G01410.1	GSMUA_Achr1P25530_001	AT5G01410.1	16766694
AT5G01410.1	GSMUA_Achr1P27650_001	AT5G01410.1	16766694
AT5G01410.1	GSMUA_Achr8P31880_001	AT5G01410.1	16766694
AT5G01410.1	GSMUA_AchrUn_...	AT5G01410.1	16766694
AT5G01410.1	GSMUA_AchrUn_...	AT5G01410.1	16766694
AT5G01410.1	GSMUA_Achr1P25530_001	AT5G01410.1	21798944
AT5G01410.1	GSMUA_Achr1P27650_001	AT5G01410.1	21798944
AT5G01410.1	GSMUA_Achr8P31880_001	AT5G01410.1	21798944
AT5G01410.1	GSMUA_AchrUn_...	AT5G01410.1	21798944
AT5G01410.1	GSMUA_AchrUn_...	AT5G01410.1	21798944
AT5G01410.1	GSMUA_Achr7P07370_001	AT5G60540.1	16766694

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
GSMUA_Achr1P25530_001	Banana	cytosol	82.71	95.31
GSMUA_AchrUn_...	Banana	cytosol	81.36	93.75
AT2G38210.1	Thale cress	cytosol, peroxisome, plastid	21.69	81.01
GSMUA_Achr8P31880_001	Banana	cytosol	70.51	75.09
PGSC0003DMT400078045	Potato	cytosol	75.25	71.84
KRH11075	Soybean	endoplasmic reticulum, nucleus	75.59	71.7
Solyc06g081980.1.1	Tomato	extracellular, nucleus, plastid, unclear	74.92	71.52
KRH21198	Soybean	endoplasmic reticulum	75.25	71.38
OQU88300	Sorghum	cytosol	75.93	70.66
Os07t0100200-01	Rice	plasma membrane	75.93	70.44
CDY11202	Canola	cytosol	73.56	70.23
Bra005687.1-P	Field mustard	cytosol	73.56	70.23
AT5G01410.1	Thale cress	cytosol	73.56	70.23
CDX80774	Canola	cytosol	73.22	69.9
Zm00001d007936_P001	Maize	cytosol	74.92	69.72
TraesCS2D01G267800.1	Wheat	cytosol	74.58	69.62
CDY04839	Canola	cytosol	72.88	69.58
Bra028901.1-P	Field mustard	cytosol	72.88	69.58
Zm00001d018633_P001	Maize	cytosol	74.58	69.4
TraesCS2B01G287600.1	Wheat	cytosol	74.24	69.3
AT2G38230.1	Thale cress	cytosol	72.2	68.93
TraesCS4B01G138900.1	Wheat	cytosol	73.22	68.79
Os10t0100700-01	Rice	plasma membrane	72.88	68.69
TraesCS4D01G133600.1	Wheat	cytosol	72.88	68.47
HORVU2Hr1G065120.1	Barley	cytosol	73.22	68.35
HORVU4Hr1G027040.2	Barley	cytosol, peroxisome	72.88	68.04
TraesCS4A01G178700.1	Wheat	cytosol	72.2	67.83
CDX93320	Canola	cytosol	65.42	66.78
GSMUA_Achr1P27650_001	Banana	cytosol	18.64	66.27
VIT_06s0004g06640.t01	Wine grape	cytosol	73.9	64.69
CDY18400	Canola	cytosol	54.92	61.36
Os11t0708500-01	Rice	plasma membrane	70.51	57.3
TraesCS2A01G268800.1	Wheat	plastid	74.58	56.99
Zm00001d018632_P001	Maize	extracellular	75.25	53.75
Os10t0191600-00	Rice	plasma membrane	17.63	28.11

Protein Annotations

KEGG:00750+4.3.3.6	Gene3D:3.20.20.70	MapMan:7.7.1.1	InterPro:Aldolase_TIM	GO:GO:0003674	GO:GO:0003824
GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	GO:GO:0042819	GO:GO:0042823
EnsemblPlantsGene:GSMUA_AchrUn_randomG00210_001	EnsemblPlants:GSMUA_AchrUn_randomP00210_001	EnsemblPlants:GSMUA_AchrUn_randomT00210_001	InterPro:IPR001852	InterPro:IPR013785	UniProt:M0U533
PFAM:PF01680	PIRSF:PIRSF029271	PFscan:PS51129	PANTHER:PTHR31829	InterPro:PdxS/SNZ	InterPro:PdxS/SNZ_N
InterPro:RibuloseP-bd_barrel	SUPFAM:SSF51366	UniParc:UPI0002959AD2	:	:	:

Description

Probable pyridoxal biosynthesis protein PDX1.1 [Source:GMGC_GENE;Acc:GSMUA_AchrUn_randomG00210_001]

Coordinates

chrchrUn_random:+:612482..613823

Molecular Weight (calculated)

32174.2 Da

IEP (calculated)

6.364

GRAVY (calculated)

0.150

Length

295 amino acids

Sequence
(BLAST)

001: MSDSGVVMVY GNGAALTEPK KSSTFSVKVG LAQMLRGGVI MDVVTPEQAR VAEEAGACAV MALERVPADI RAQGGVARMS DPGLIKEIKR AVTIPVMAKA
101: RIGHFVEAQI LEAIGVDYVD ESEVLTPADE QNHINKHNFR VPFVCGCRDL GEALRRIREG AAMIRTKGEA GTGNIIEAVR HVRSVMGDIR ALRNMDDDEV
201: FTFAKRIAAP YDLVMQTKQL GRLPVILAEV SCGLGEAMVG INLSDAKCIS WLIGALEISD VSFPLAWIQR NHSFTSFYYS FAGIWWLCRT LFGIE

Best Arabidopsis Sequence Match ( AT5G01410.2 )
(BLAST)

001: MEGTGVVAVY GNGAITEAKK SPFSVKVGLA QMLRGGVIMD VVNAEQARIA EEAGACAVMA LERVPADIRA QGGVARMSDP QMIKEIKQAV TIPVMAKARI
101: GHFVEAQILE AIGIDYIDES EVLTLADEDH HINKHNFRIP FVCGCRNLGE ALRRIREGAA MIRTKGEAGT GNIIEAVRHV RSVNGDIRVL RNMDDDEVFT
201: FAKKLAAPYD LVMQTKQLGR LPVVQFAAGG VATPADAALM MQLGCDGVFV GSGIFKSGDP ARRARAIVQA VTHYSDPEML VEVSCGLGEA MVGINLNDEK
301: VERFANRSE

Arabidopsis Description

PDX13RSR4 [Source:UniProtKB/TrEMBL;Acc:A0A178UIV6]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.