Factsheet for Os10t0100700-01

Subcellular Localization

min:

: max

Winner_takes_all: plasma membrane

Predictor Summary:

nucleus 1
vacuole 1
peroxisome 1
cytosol 3
mitochondrion 1

Predictors

GFP

MS/MS

Papers

plasma membrane: 27800704

msms PMID: 27800704 doi

J Cao, C Yang, L Li, L Jiang, Y Wu, C Wu, Q Bu, G Xia, X Liu, Y Luo, J Liu

Huai'an Institute of Agricultural Sciences, Huai'an, 223001, China., Institute of Analytical Chemistry and Synthetic and Functional Biomolecules Center, College of Chemistry and Molecular Engineering, Peking University, Beijing, 100871, China; and., Northeast Institute of Geography and Agroecology, Key Laboratory of Soybean Molecular Design Breeding, Chinese Academy of Sciences, Harbin, 150081, China., State Key Laboratory of Plant Genomics, Institute of Microbiology, Chinese Academy of Sciences, Beijing, 100101, China.

PPI

Inferred distinct locusB in Crop

locusB	locations
Os02t0130100-01
Os07t0100200-01
Os10t0100700-01
Os10t0191600-00
Os11t0708500-01

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT2G38230.1	Os07t0100200-01	AT5G01410.1	16766694
AT2G38230.1	Os10t0100700-01	AT5G01410.1	16766694
AT2G38230.1	Os10t0191600-00	AT5G01410.1	16766694
AT2G38230.1	Os11t0708500-01	AT5G01410.1	16766694
AT2G38230.1	Os02t0130100-01	AT5G60540.1	16766694
AT5G01410.1	Os07t0100200-01	AT2G38230.1	16766694
AT5G01410.1	Os10t0100700-01	AT2G38230.1	16766694
AT5G01410.1	Os10t0191600-00	AT2G38230.1	16766694
AT5G01410.1	Os11t0708500-01	AT2G38230.1	16766694
AT5G01410.1	Os07t0100200-01	AT5G01410.1	16766694
AT5G01410.1	Os10t0100700-01	AT5G01410.1	16766694
AT5G01410.1	Os10t0191600-00	AT5G01410.1	16766694
AT5G01410.1	Os11t0708500-01	AT5G01410.1	16766694
AT5G01410.1	Os07t0100200-01	AT5G01410.1	21798944
AT5G01410.1	Os10t0100700-01	AT5G01410.1	21798944
AT5G01410.1	Os10t0191600-00	AT5G01410.1	21798944
AT5G01410.1	Os11t0708500-01	AT5G01410.1	21798944
AT5G01410.1	Os02t0130100-01	AT5G60540.1	16766694

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Os07t0100200-01	Rice	plasma membrane	93.61	92.14
Zm00001d018633_P001	Maize	cytosol	90.1	88.96
OQU88300	Sorghum	cytosol	89.46	88.33
Zm00001d007936_P001	Maize	cytosol	88.82	87.7
GSMUA_Achr8P31880_001	Banana	cytosol	77.0	87.0
GSMUA_Achr1P25530_001	Banana	cytosol	70.61	86.33
GSMUA_AchrUn_...	Banana	cytosol	69.97	85.55
KRH11075	Soybean	endoplasmic reticulum, nucleus	84.66	85.21
KRH21198	Soybean	endoplasmic reticulum	84.34	84.89
Bra028901.1-P	Field mustard	cytosol	83.71	84.79
CDX80774	Canola	cytosol	83.71	84.79
CDY04839	Canola	cytosol	83.71	84.79
Bra005687.1-P	Field mustard	cytosol	83.39	84.47
CDY11202	Canola	cytosol	83.39	84.47
PGSC0003DMT400078045	Potato	cytosol	83.07	84.14
AT5G01410.1	Thale cress	cytosol	83.07	84.14
Solyc06g081980.1.1	Tomato	extracellular, nucleus, plastid, unclear	82.75	83.82
AT2G38230.1	Thale cress	cytosol	81.47	82.52
CDX93320	Canola	cytosol	76.04	82.35
CDY18400	Canola	cytosol	66.45	78.79
VIT_06s0004g06640.t01	Wine grape	cytosol	81.79	75.96
AT2G38210.1	Thale cress	cytosol, peroxisome, plastid	18.85	74.68
GSMUA_AchrUn_...	Banana	cytosol	68.69	72.88
Os11t0708500-01	Rice	plasma membrane	84.34	72.73
Zm00001d018632_P001	Maize	extracellular	90.1	68.28
Os10t0191600-00	Rice	plasma membrane	30.67	51.89
GSMUA_Achr1P27650_001	Banana	cytosol	11.82	44.58

Protein Annotations

KEGG:00750+4.3.3.6	Gene3D:3.20.20.70	EntrezGene:4347937	MapMan:7.7.1.1	ProteinID:AAL73561.1	ProteinID:AAM08638.1
ProteinID:AAP51743.1	EMBL:AK060323	InterPro:Aldolase_TIM	ProteinID:BAF25924.1	ProteinID:BAT09558.1	GO:GO:0003674
GO:GO:0003824	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	GO:GO:0016829
GO:GO:0036381	GO:GO:0042819	GO:GO:0042823	InterPro:IPR001852	InterPro:IPR013785	HAMAP:MF_01824
EnsemblPlantsGene:Os10g0100700	EnsemblPlants:Os10t0100700-01	PFAM:PF01680	PIRSF:PIRSF029271	ScanProsite:PS01235	PFscan:PS51129
PANTHER:PTHR31829	InterPro:PdxS/SNZ	InterPro:PdxS/SNZ_N	UniProt:Q8W3D0	InterPro:RibuloseP-bd_barrel	SUPFAM:SSF51366
TIGRFAMs:TIGR00343	UniParc:UPI00000AA215	RefSeq:XP_015613234.1	SEG:seg	:	:

Description

PDX12Vitamin B6 biosynthesis protein family protein. (Os10t0100700-01)

Coordinates

chr10:-:81102..82243

Molecular Weight (calculated)

33151.2 Da

IEP (calculated)

6.631

GRAVY (calculated)

0.104

Length

313 amino acids

Sequence
(BLAST)

001: MASDGTDVVA LYGGANGLSH KSGSFSVKVG LAQMLRGGVI MDVVTPEQAR IAEEAGACAV MALERVPADI RAQGGVARMS DPGLIRDIKR SVTIPVMAKA
101: RIGHLVEAQI LEAIGVDYVD ESEVLTLADD AHHINKNNFR VPFVCGCRDL GEALRRIREG AAMIRTKGEA GTGNVVEAVR HVRSVMGDIR ALRSMDDDEV
201: FSYAKRIAAP YDLVMQTKQL GRLPVVQFAA GGVATPADAA LMMQLGCDGV FVGSGIFKSG DPALRARAIV QAVTHYSDPK ILAEVSSGLG EAMVGINLSD
301: PKIHVERFAA RSD

Best Arabidopsis Sequence Match ( AT5G01410.2 )
(BLAST)

001: MEGTGVVAVY GNGAITEAKK SPFSVKVGLA QMLRGGVIMD VVNAEQARIA EEAGACAVMA LERVPADIRA QGGVARMSDP QMIKEIKQAV TIPVMAKARI
101: GHFVEAQILE AIGIDYIDES EVLTLADEDH HINKHNFRIP FVCGCRNLGE ALRRIREGAA MIRTKGEAGT GNIIEAVRHV RSVNGDIRVL RNMDDDEVFT
201: FAKKLAAPYD LVMQTKQLGR LPVVQFAAGG VATPADAALM MQLGCDGVFV GSGIFKSGDP ARRARAIVQA VTHYSDPEML VEVSCGLGEA MVGINLNDEK
301: VERFANRSE

Arabidopsis Description

PDX13RSR4 [Source:UniProtKB/TrEMBL;Acc:A0A178UIV6]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.