Factsheet for GSMUA_Achr1P25530_001

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

cytosol 4
vacuole 1
plastid 1
peroxisome 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
GSMUA_Achr1P25530_001
GSMUA_Achr1P27650_001
GSMUA_Achr7P07370_001
GSMUA_Achr8P31880_001
GSMUA_AchrUn_...
GSMUA_AchrUn_...

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT2G38230.1	GSMUA_Achr1P25530_001	AT5G01410.1	16766694
AT2G38230.1	GSMUA_Achr1P27650_001	AT5G01410.1	16766694
AT2G38230.1	GSMUA_Achr8P31880_001	AT5G01410.1	16766694
AT2G38230.1	GSMUA_AchrUn_...	AT5G01410.1	16766694
AT2G38230.1	GSMUA_AchrUn_...	AT5G01410.1	16766694
AT2G38230.1	GSMUA_Achr7P07370_001	AT5G60540.1	16766694
AT5G01410.1	GSMUA_Achr1P25530_001	AT2G38230.1	16766694
AT5G01410.1	GSMUA_Achr1P27650_001	AT2G38230.1	16766694
AT5G01410.1	GSMUA_Achr8P31880_001	AT2G38230.1	16766694
AT5G01410.1	GSMUA_AchrUn_...	AT2G38230.1	16766694
AT5G01410.1	GSMUA_AchrUn_...	AT2G38230.1	16766694
AT5G01410.1	GSMUA_Achr1P25530_001	AT5G01410.1	16766694
AT5G01410.1	GSMUA_Achr1P27650_001	AT5G01410.1	16766694
AT5G01410.1	GSMUA_Achr8P31880_001	AT5G01410.1	16766694
AT5G01410.1	GSMUA_AchrUn_...	AT5G01410.1	16766694
AT5G01410.1	GSMUA_AchrUn_...	AT5G01410.1	16766694
AT5G01410.1	GSMUA_Achr1P25530_001	AT5G01410.1	21798944
AT5G01410.1	GSMUA_Achr1P27650_001	AT5G01410.1	21798944
AT5G01410.1	GSMUA_Achr8P31880_001	AT5G01410.1	21798944
AT5G01410.1	GSMUA_AchrUn_...	AT5G01410.1	21798944
AT5G01410.1	GSMUA_AchrUn_...	AT5G01410.1	21798944
AT5G01410.1	GSMUA_Achr7P07370_001	AT5G60540.1	16766694

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
GSMUA_AchrUn_...	Banana	cytosol	97.27	97.27
GSMUA_AchrUn_...	Banana	cytosol	95.31	82.71
AT2G38210.1	Thale cress	cytosol, peroxisome, plastid	24.61	79.75
GSMUA_Achr8P31880_001	Banana	cytosol	83.59	77.26
OQU88300	Sorghum	cytosol	91.41	73.82
PGSC0003DMT400078045	Potato	cytosol	89.06	73.79
KRH11075	Soybean	endoplasmic reticulum, nucleus	89.45	73.63
Solyc06g081980.1.1	Tomato	extracellular, nucleus, plastid, unclear	88.67	73.46
KRH21198	Soybean	endoplasmic reticulum	89.06	73.31
Os07t0100200-01	Rice	plasma membrane	91.02	73.27
Zm00001d007936_P001	Maize	cytosol	90.23	72.87
Zm00001d018633_P001	Maize	cytosol	89.84	72.56
AT5G01410.1	Thale cress	cytosol	87.11	72.17
TraesCS2D01G267800.1	Wheat	cytosol	88.67	71.84
CDY11202	Canola	cytosol	86.33	71.52
CDY04839	Canola	cytosol	86.33	71.52
Bra028901.1-P	Field mustard	cytosol	86.33	71.52
Bra005687.1-P	Field mustard	cytosol	86.33	71.52
TraesCS2B01G287600.1	Wheat	cytosol	88.28	71.52
CDX80774	Canola	cytosol	85.94	71.2
HORVU2Hr1G065120.1	Barley	cytosol	87.5	70.89
Os10t0100700-01	Rice	plasma membrane	86.33	70.61
TraesCS4D01G133600.1	Wheat	cytosol	86.33	70.38
TraesCS4B01G138900.1	Wheat	cytosol	85.94	70.06
HORVU4Hr1G027040.2	Barley	cytosol, peroxisome	86.33	69.94
TraesCS4A01G178700.1	Wheat	cytosol	85.55	69.75
AT2G38230.1	Thale cress	cytosol	83.98	69.58
CDX93320	Canola	cytosol	76.95	68.17
VIT_06s0004g06640.t01	Wine grape	cytosol	86.33	65.58
GSMUA_Achr1P27650_001	Banana	cytosol	20.7	63.86
CDY18400	Canola	cytosol	63.28	61.36
TraesCS2A01G268800.1	Wheat	plastid	88.67	58.81
Os11t0708500-01	Rice	plasma membrane	82.03	57.85
Zm00001d018632_P001	Maize	extracellular	90.62	56.17
Os10t0191600-00	Rice	plasma membrane	19.92	27.57

Protein Annotations

KEGG:00750+4.3.3.6	Gene3D:3.20.20.70	MapMan:7.7.1.1	InterPro:Aldolase_TIM	GO:GO:0003674	GO:GO:0003824
GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	GO:GO:0042819	GO:GO:0042823
EnsemblPlantsGene:GSMUA_Achr1G25530_001	EnsemblPlants:GSMUA_Achr1P25530_001	EnsemblPlants:GSMUA_Achr1T25530_001	InterPro:IPR001852	InterPro:IPR013785	UniProt:M0S310
PFAM:PF01680	PIRSF:PIRSF029271	PFscan:PS51129	PANTHER:PTHR31829	InterPro:PdxS/SNZ	InterPro:PdxS/SNZ_N
InterPro:RibuloseP-bd_barrel	SUPFAM:SSF51366	UniParc:UPI000294CECC	:	:	:

Description

Probable pyridoxal biosynthesis protein PDX1.1 [Source:GMGC_GENE;Acc:GSMUA_Achr1G25530_001]

Coordinates

chr1:+:19849382..19850441

Molecular Weight (calculated)

27639.7 Da

IEP (calculated)

6.677

GRAVY (calculated)

0.021

Length

256 amino acids

Sequence
(BLAST)

001: MSDSGVVTVY GNGAALLEPK KSSTFSVKVG LAQMLRGGVI MDVVTPEQAR VAEEAGACAV MALERVPADI RAQGGVARMS DPGLIKEIKR AVTIPVMAKA
101: RIGHFVEAQI LEAIGVDYVD ESEVLTPADD QHHINKHNFR VPFVCGCRDL GEALRRIREG AAMIRTKGEA GTGNIIEAVR HVRSVMGDIR ALRNMDDDEV
201: FTFAKRIAAP YDLVMQTKQL GRLPVILAEV SCGLGEAMVG INLNDAKVER FATRSE

Best Arabidopsis Sequence Match ( AT5G01410.2 )
(BLAST)

001: MEGTGVVAVY GNGAITEAKK SPFSVKVGLA QMLRGGVIMD VVNAEQARIA EEAGACAVMA LERVPADIRA QGGVARMSDP QMIKEIKQAV TIPVMAKARI
101: GHFVEAQILE AIGIDYIDES EVLTLADEDH HINKHNFRIP FVCGCRNLGE ALRRIREGAA MIRTKGEAGT GNIIEAVRHV RSVNGDIRVL RNMDDDEVFT
201: FAKKLAAPYD LVMQTKQLGR LPVVQFAAGG VATPADAALM MQLGCDGVFV GSGIFKSGDP ARRARAIVQA VTHYSDPEML VEVSCGLGEA MVGINLNDEK
301: VERFANRSE

Arabidopsis Description

PDX13RSR4 [Source:UniProtKB/TrEMBL;Acc:A0A178UIV6]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.