Skip to main content
crop-pal logo
Tomato
Search for another protein from :
Tomato
Subcellular Localization
min:
: max

 
Winner_takes_all: cytosol

Predictor Summary:
  • cytosol 4
  • vacuole 1
  • peroxisome 1
  • mitochondrion 1
Predictors GFP MS/MS Papers
Winner Takes All:cytosol
Any Predictor:cytosol, mitochondrion, peroxisome, vacuole
BaCelLo:cytosol
EpiLoc:vacuole
MultiLoc:peroxisome
Plant-mPloc:cytosol
PProwler:mitochondrion
WoLF PSORT:cytosol
YLoc:cytosol
PPI

Inferred distinct locusB in Crop

locusBlocations
Solyc03g120090.1.1
Solyc06g081980.1.1

Inferred from Arabidopsis experimental PPI

Ath locusAlocusBAth locusBPaper
AT3G16050.1 Solyc06g081980.1.1 AT2G38230.1 16766694
AT3G16050.1 Solyc03g120090.1.1 AT3G16050.1 16766694
AT3G16050.1 Solyc06g081980.1.1 AT5G01410.1 16766694
AT3G16050.1 Solyc06g081980.1.1 AT5G01410.1 21798944
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
PGSC0003DMT400014295 Potato cytosol 98.03 98.03
VIT_09s0002g04490.t01 Wine grape cytosol 69.18 72.01
AT3G16050.1 Thale cress cytosol 68.52 66.56
CDY20176 Canola cytosol 65.57 65.79
Solyc06g081980.1.1 Tomato extracellular, nucleus, plastid, unclear 65.9 65.05
Bra021157.1-P Field mustard cytosol 64.26 64.47
CDY50623 Canola plastid 66.89 50.62
Protein Annotations
KEGG:00750+4.3.3.6Gene3D:3.20.20.70MapMan:7.7.1.1InterPro:Aldolase_TIMGO:GO:0003674GO:GO:0003824
GO:GO:0005488GO:GO:0005515GO:GO:0005575GO:GO:0005622GO:GO:0005623GO:GO:0005737
GO:GO:0005829GO:GO:0008150GO:GO:0008152GO:GO:0009058GO:GO:0009987GO:GO:0042819
GO:GO:0042823GO:GO:0046982InterPro:IPR001852InterPro:IPR013785UniProt:K4BMF8PFAM:PF01680
PIRSF:PIRSF029271PFscan:PS51129PANTHER:PTHR31829PANTHER:PTHR31829:SF2InterPro:PdxS/SNZInterPro:PdxS/SNZ_N
InterPro:RibuloseP-bd_barrelSUPFAM:SSF51366EnsemblPlantsGene:Solyc03g120090.1EnsemblPlants:Solyc03g120090.1.1UniParc:UPI00027669A9:
Description
Pyridoxal 5'-phosphate synthase-like subunit PDX1.2 [Source:Projected from Arabidopsis thaliana (AT3G16050) UniProtKB/Swiss-Prot;Acc:Q9ZNR6]
Coordinates
chr3:+:68587984..68588901
Molecular Weight (calculated)
32733.4 Da
IEP (calculated)
5.068
GRAVY (calculated)
0.017
Length
305 amino acids
Sequence
(BLAST)
001: MEEDGAVTVY SGSAITDTKK NSFSIKVGIA QMLRGGAIAE VTTVNQAKIA ESAGVCCLVV SEPKGPGISR MPDPSLIKEI KQAVALPVMA KARVGHFVEA
101: QILEAIGVDY IDESEILALA DEDHFVNKHN FRAPFVCGCR DLGEALRRVR EGAAMVRTQG DLAGTGSIVD TVHNVRKVMG DIRILSNMDD DEVFTFSKKI
201: GAPYDIVAQT KQMGRLPVVH FAAGGIVTPA DAALMMQLGC DGVFVGSDIF NCSDPYKKVR AIVQAVRNYN DPHILAAASS GLEEAMGGLN LNENRVERFV
301: SDENY
Best Arabidopsis Sequence Match ( AT3G16050.1 )
(BLAST)
001: MADQAMTDQD QGAVTLYSGT AITDAKKNHP FSVKVGLAQV LRGGAIVEVS SVNQAKLAES AGACSVIVSD PVRSRGGVRR MPDPVLIKEV KRAVSVPVMA
101: RARVGHFVEA QILESLAVDY IDESEIISVA DDDHFINKHN FRSPFICGCR DTGEALRRIR EGAAMIRIQG DLTATGNIAE TVKNVRSLMG EVRVLNNMDD
201: DEVFTFAKKI SAPYDLVAQT KQMGRVPVVQ FASGGITTPA DAALMMQLGC DGVFVGSEVF DGPDPFKKLR SIVQAVQHYN DPHVLAEMSS GLENAMESLN
301: VRGDRIQDFG QGSV
Arabidopsis Description
PDX12Pyridoxal 5'-phosphate synthase-like subunit PDX1.2 [Source:UniProtKB/Swiss-Prot;Acc:Q9ZNR6]
SUBAcon: [cytosol]
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.