Factsheet for VIT_09s0002g04490.t01

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 1
vacuole 1
peroxisome 1
cytosol 3
mitochondrion 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
VIT_06s0004g06640.t01
VIT_09s0002g04490.t01

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G16050.1	VIT_06s0004g06640.t01	AT2G38230.1	16766694
AT3G16050.1	VIT_09s0002g04490.t01	AT3G16050.1	16766694
AT3G16050.1	VIT_06s0004g06640.t01	AT5G01410.1	16766694
AT3G16050.1	VIT_06s0004g06640.t01	AT5G01410.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc03g120090.1.1	Tomato	cytosol	72.01	69.18
PGSC0003DMT400014295	Potato	cytosol	70.65	67.87
Bra021157.1-P	Field mustard	cytosol	67.24	64.8
CDY20176	Canola	cytosol	67.24	64.8
AT3G16050.1	Thale cress	cytosol	65.87	61.47
VIT_06s0004g06640.t01	Wine grape	cytosol	65.53	56.97
CDY50623	Canola	plastid	66.55	48.39

Protein Annotations

KEGG:00750+4.3.3.6	EntrezGene:100242970	wikigene:100242970	Gene3D:3.20.20.70	MapMan:7.7.1.1	EMBL:AM444529
InterPro:Aldolase_TIM	ProteinID:CAN76358	ProteinID:CAN76358.1	ProteinID:CCB59473	ProteinID:CCB59473.1	UniProt:F6HYF0
EMBL:FN596494	GO:GO:0003674	GO:GO:0003824	GO:GO:0005488	GO:GO:0005515	GO:GO:0005575
GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0005829	GO:GO:0008150	GO:GO:0008152
GO:GO:0009058	GO:GO:0009987	GO:GO:0042819	GO:GO:0042823	GO:GO:0046982	InterPro:IPR001852
InterPro:IPR013785	EntrezGene:LOC100242970	wikigene:LOC100242970	PFAM:PF01680	PIRSF:PIRSF029271	PFscan:PS51129
PANTHER:PTHR31829	PANTHER:PTHR31829:SF2	InterPro:PdxS/SNZ	InterPro:PdxS/SNZ_N	InterPro:RibuloseP-bd_barrel	SUPFAM:SSF51366
TIGR:TC53558	UniParc:UPI00015C8A9B	ArrayExpress:VIT_09s0002g04490	EnsemblPlantsGene:VIT_09s0002g04490	EnsemblPlants:VIT_09s0002g04490.t01	unigene:Vvi.7526
RefSeq:XP_002284601	RefSeq:XP_002284601.1	RefSeq:XP_010654664.1	SEG:seg	:	:

Description

No Description!

Coordinates

chr9:+:4085576..4086904

Molecular Weight (calculated)

31472.1 Da

IEP (calculated)

4.969

GRAVY (calculated)

0.166

Length

293 amino acids

Sequence
(BLAST)

001: MAEEGVVTVY GSGAITDPAK TSFSIKAGMA QMLRGGAIFE VMNLDQAKIA EEAGACAVIV SESVSKGISR LIDPAVIKEI KRRVAIPVIA RARVGHFVEA
101: QILEAIGVDY IDESELSVAD EDNFINKHNF RTPFVCGCRD LGEALRRVRE GAVMIRIQGD LSGSGNVAET VRNVRKVMGD IRVLTNMDDD EVFAFSKKIG
201: AAYDVVAQTK EMARLPVLHF AAGGIVTPAD AALMMQLGCD GVLVGSKIFG SADPYKRVRA IVQAVRHYND AQVLAESCSE LDVAVADLRI VEE

Best Arabidopsis Sequence Match ( AT3G16050.1 )
(BLAST)

001: MADQAMTDQD QGAVTLYSGT AITDAKKNHP FSVKVGLAQV LRGGAIVEVS SVNQAKLAES AGACSVIVSD PVRSRGGVRR MPDPVLIKEV KRAVSVPVMA
101: RARVGHFVEA QILESLAVDY IDESEIISVA DDDHFINKHN FRSPFICGCR DTGEALRRIR EGAAMIRIQG DLTATGNIAE TVKNVRSLMG EVRVLNNMDD
201: DEVFTFAKKI SAPYDLVAQT KQMGRVPVVQ FASGGITTPA DAALMMQLGC DGVFVGSEVF DGPDPFKKLR SIVQAVQHYN DPHVLAEMSS GLENAMESLN
301: VRGDRIQDFG QGSV

Arabidopsis Description

PDX12Pyridoxal 5'-phosphate synthase-like subunit PDX1.2 [Source:UniProtKB/Swiss-Prot;Acc:Q9ZNR6]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.