Subcellular Localization
min:
: max
Winner_takes_all: endoplasmic reticulum, extracellular
Predictor Summary:
Predictor Summary:
- extracellular 6
- endoplasmic reticulum 6
- vacuole 5
- plasma membrane 5
- golgi 5
- cytosol 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| AT1G03330.1 | Thale cress | cytosol | 85.85 | 97.85 |
| PGSC0003DMT400009801 | Potato | cytosol | 81.13 | 92.47 |
| Solyc09g072970.2.1 | Tomato | cytosol | 81.13 | 92.47 |
| KXG30280 | Sorghum | cytosol | 80.19 | 91.4 |
| Solyc06g084350.2.1 | Tomato | cytosol | 80.19 | 91.4 |
| VIT_07s0104g00560.t01 | Wine grape | cytosol | 82.08 | 89.69 |
| PGSC0003DMT400051614 | Potato | cytosol | 70.75 | 89.29 |
| KRG95475 | Soybean | nucleus | 77.36 | 88.17 |
| KRH67157 | Soybean | cytosol | 77.36 | 88.17 |
| GSMUA_Achr8P06050_001 | Banana | extracellular | 81.13 | 81.9 |
| CDX86679 | Canola | cytosol | 84.91 | 72.58 |
| CDY15459 | Canola | cytosol | 84.91 | 69.77 |
| Zm00001d024593_P001 | Maize | cytosol | 51.89 | 68.75 |
| GSMUA_Achr11P... | Banana | cytosol | 80.19 | 55.92 |
| Zm00001d024591_P001 | Maize | cytosol, mitochondrion, nucleus | 37.74 | 28.37 |
Protein Annotations
| EnsemblPlants:CDX89900 | EnsemblPlantsGene:GSBRNA2T00150381001 | Gene3D:2.30.30.100 | GO:A0A078DL21 | GO:GO:0006139 | GO:GO:0006397 |
| GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009987 | InterPro:LSM_dom_euk/arc | InterPro:LSM_dom_sf | InterPro:U6_snRNA_Lsm2 |
| PANTHER:PTHR13829 | PFAM:PF01423 | PIRSF:PIRSF016394 | ProteinID:CDX89900 | ProteinID:CDX89900.1 | SEG:seg |
| SignalP:SignalP-noTM | SMART:SM00651 | SUPFAM:SSF50182 | UniParc:UPI0004EF15D6 | MapMan:16.4.3.2 | : |
Description
BnaA10g01820D
Coordinates
chrLK031861:+:693523..694714
Molecular Weight (calculated)
12212.8 Da
IEP (calculated)
7.602
GRAVY (calculated)
-0.079
Length
106 amino acids
Sequence
(BLAST)
(BLAST)
001: MVKLYAFFMN LSFSLFFSYF KDLVGQEVTV ELKNDLAIRG TLHSVDQYLN IKLENTRVVD QDKYPHMLSV RNCFIRGSVV RYVQLPPDGV DVDLLHDAAR
101: REARGG
101: REARGG
1: MLFFSYFKDL VGQEVTVELK NDLAIRGTLH SVDQYLNIKL ENTRVVDQDK YPHMLSVRNC FIRGSVVRYV QLPKDGVDVD LLHDAARREA RGG
Arabidopsis Description
LSM2Sm-like protein LSM2 [Source:UniProtKB/TrEMBL;Acc:A0A178W785]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.